Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2512 269 3e-67 seq82 98.7 1e-15 >seq2512 Length=7492 Score = 269 bits (298), Expect = 3e-67 Identities = 1144/1780 (64%), Gaps = 43/1780 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 740 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 799 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 800 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 859 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 860 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 919 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 920 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 979 Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || ||||| || |||||||| || || || | ||||| || | || | Sbjct 980 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1039 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 1040 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1099 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 1100 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1159 Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 1160 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1218 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529 || | | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 1219 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1277 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589 ||| || || || | | || ||| | || || || || | Sbjct 1278 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 1337 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 1338 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1395 Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62705 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 1396 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1452 Query 62706 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 1453 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 1511 Query 62765 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 |||| | | ||||| | || || || || || || || || || || | ||||||| Sbjct 1512 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1571 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62879 ||| |||| || || | || || | ||||| | || | ||| || | || Sbjct 1572 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 1631 Query 62880 AACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 | ||||| || |||| || |||| ||||| || || |||| | | | | Sbjct 1632 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 1691 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 ||| | || || ||||| | ||| | || || || | || | ||| || | Sbjct 1692 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 1751 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 |||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| | Sbjct 1752 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 1811 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCT 63113 | | ||| | | ||| | | | || || || | || | || || | |||| Sbjct 1812 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCT 1871 Query 63114 CTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | | || |||| | | | ||| |||||||| || | |||| |||| ||| Sbjct 1872 CATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCA 1924 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 |||||||||| || ||||| | | ||| || ||| | | || || ||||| ||| Sbjct 1925 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 1984 Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 ||||| |||||||| | || ||| || ||||| | || | ||| || || || Sbjct 1985 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 2043 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 2044 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 2103 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | ||||| || |||||||| || || || | ||||||||| |||||||| |||| Sbjct 2104 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAAC 2163 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 || | ||| || | || ||||| || |||| |||||||||| ||| || ||| | Sbjct 2164 TCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 2223 Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 |||||| || | ||| ||||| || || || || |||||||||| | || || Sbjct 2224 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2283 Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 | || | || ||||| ||||| || || ||||| || |||| | || || || || Sbjct 2284 TGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCA 2343 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 || | || | || || || || | ||||| || ||||| || || Sbjct 2344 TGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 2403 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63708 |||| | || | || ||||| |||||||| || || ||||| || | |||| Sbjct 2404 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 2462 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | || || || |||||||| | ||| ||||| || | ||| Sbjct 2463 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 2502 >seq82 Length=17769 Score = 98.7 bits (108), Expect = 1e-15 Identities = 570/919 (62%), Gaps = 65/919 (7%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || || ||||| ||||| || | || ||||| || || || || || Sbjct 7458 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 7399 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 | | | || || || |||||||| || || || |||| | || || | || | Sbjct 7398 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 7340 Query 33117 TCCCAATTCAGAAATCAAT-CTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33174 | |||| || || | ||| || ||||| || || ||| ||||||| ||| Sbjct 7339 TACCAAGAGCGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCG 7280 Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234 | ||||| || | |||| | ||||||||| | || | ||||||||||| || Sbjct 7279 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 7221 Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 33294 || || ||||| || | | | || | | | || || | ||| || || Sbjct 7220 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 7161 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || | | || ||||| ||| || ||||| || || | || || || ||||| Sbjct 7160 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 7101 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| || | ||| | ||||||||| || ||||| || || ||||||||||||||| Sbjct 7100 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 7041 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473 |||||||| || || || |||||||| |||| || | || || | | | | Sbjct 7040 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 6981 Query 33474 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA-------- 33523 ||| || ||||| | |||||| ||||| ||||| || | ||||| | Sbjct 6980 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAG 6921 Query 33524 -------------------------------------------TCGTTTCTATGGCATTA 33540 | || || || ||||| Sbjct 6920 ATAGTTAGGAAATGTATTGTTTAGACCAATGAATGTGACTCACTTGTCTCAATTGCATTG 6861 Query 33541 AAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| ||| || | | || |||| || |||||||| | ||| || | Sbjct 6860 AAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGATGAGGAGAGAGTATGT 6802 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || || ||||| || || || || || |||||||| || | |||||||| || Sbjct 6801 TTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGAT 6742 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| || || || || | | || || || ||||||||||| ||||| Sbjct 6741 TTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGC 6682 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TGGTGTTAGTTTATTCC 33775 || || || | || || || ||||| || || | | ||| ||| ||||| Sbjct 6681 GAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATTGAGTTTGTT-ATTCC 6623 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 |||| | | || || || | || | ||||| ||||||| || |||||||| |||| Sbjct 6622 AATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCT 6563 Query 33836 TTTTATACATGTTCCAGAT 33854 |||| ||||| | |||||| Sbjct 6562 TTTTGTACATTTGCCAGAT 6544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622913802243240