Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq34 98.7 1e-15
seq3136 96.9 3e-15
seq82 95.1 1e-14
>seq34
Length=19952
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| | || || ||| | |||||| |||| | |||||
Sbjct 14017 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 14076
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | ||||| ||||| ||||| || || || || || |||||
Sbjct 14077 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 14136
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || || | || |||||| ||||||||||||| | | | | |||||| |||
Sbjct 14137 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 14196
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| ||||| ||| | || |||||||
Sbjct 14197 ATCCAAAAGGAATCCACTCTTCACTTGGTCCT 14228
>seq3136
Length=22676
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | ||||| ||||| ||||| || || || ||||| |||||
Sbjct 20122 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCA 20063
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|||| | | || | || || |||||||||||||||| | | | | | |||||||| ||
Sbjct 20062 ACAACGTTTGATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAA 20003
Query 26948 CATTCAAAAAGAATCTAC 26965
||| ||||||||||| ||
Sbjct 20002 CATCCAAAAAGAATCCAC 19985
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|||||| |||| | || || | ||| |||||||| | || || |||||| ||
Sbjct 20425 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 20366
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || || || ||||| | | || | || ||||||||||| ||||||
Sbjct 20365 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 20306
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | | |||||||| ||||||||||| || |||||| ||||||| |||||
Sbjct 20305 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 20250
>seq82
Length=17769
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384
|||||| | ||| ||| || || |||||| || ||||| || ||||| |||||
Sbjct 6721 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 6662
Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444
| ||| | || || | ||| || ||||| || |||||||||| || |||||| ||||
Sbjct 6661 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 6602
Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501
|||||||||||| || ||||| | | | | || || |||||| ||||||||
Sbjct 6601 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 6545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478636737712080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |