Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2512 320 4e-82 seq2636 98.7 3e-15 >seq2512 Length=7492 Score = 320 bits (354), Expect = 4e-82 Identities = 1163/1793 (65%), Gaps = 48/1793 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| ||| Sbjct 2559 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 2500 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | ||||||||||| ||||||| || | ||| | || | Sbjct 2499 CGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGC 2440 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || ||| | || | | || ||||| |||||| | || ||| Sbjct 2439 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 2382 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | ||||| || | | ||||| | || || ||||| || | | ||||||| Sbjct 2381 TTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGG 2322 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| || || ||||| | ||| || || |||| |||||| | || || || |||| Sbjct 2321 AGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 2262 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746 | || || |||||| | || |||| | ||||| || | || ||||| ||| Sbjct 2261 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 2204 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || |||| || || | || || ||||| || || || | || ||||| || Sbjct 2203 TACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAG 2144 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||||||||| |||||| ||||| || || ||||| | ||||| |||||| Sbjct 2143 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 2084 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || ||| |||| ||||| || || ||||| || ||| || || || ||| | || Sbjct 2083 GCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCG 2024 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984 || |||||||| |||||||| | ||| || | || | || |||||||| || | | Sbjct 2023 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 1964 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 | | | | ||||| |||| | ||||| | |||||||| || | | ||||||| Sbjct 1963 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 1906 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || ||||| | || ||||| || || | ||||| ||| || | | ||| ||||| Sbjct 1905 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 1846 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || || ||||| |||| |||| | || | || | |||||| |||| || Sbjct 1845 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 1786 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | |||||| ||| |||||| || |||| || || ||| Sbjct 1785 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 1726 Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | |||| ||| | || || || ||| | |||||| | || || || || || Sbjct 1725 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 1667 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337 |||||| | || || || || || || | |||| | || || || |||| || Sbjct 1666 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 1607 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393 ||| | ||| | || || || ||| | | ||| || || | ||||| | | Sbjct 1606 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 1551 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452 | |||| || || || || | || || ||| || | | ||| | |||||||| || Sbjct 1550 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 1492 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510 || | | | ||||| || || || || || | |||| || |||| || | |||||| Sbjct 1491 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTG--GCTCTTCGATTACCATTTG 1434 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || ||||| || || || | | ||||| ||||| || || || || Sbjct 1433 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 1374 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 |||| | || ||| | || || ||| | || || || || || || | Sbjct 1373 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACCTACGAAGGCTCAC 1314 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 || | ||| |||| || | || | ||| | ||| || || || | | || ||| Sbjct 1313 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 1254 Query 364691 ACTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743 ||||||||| ||| | | |||| | || | || ||| |||||| | ||| Sbjct 1253 ACTGGGATA-GCTTGAAGAAATCCA---TCAAACAACACGGTGTCCGCAACAGTTTGCTC 1198 Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803 ||| || || ||||| || || || | || || ||||| |||||||||||| Sbjct 1197 GTT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTT 1141 Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863 ||||| | || || | || || || || || | | |||||||| | || ||| Sbjct 1140 GAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTT 1081 Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923 || | || ||||||||||| |||| || | ||| |||| |||||||||| Sbjct 1080 AACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAAC 1021 Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983 ||||||||| | | ||||||| | || |||||||| |||||| || | ||| Sbjct 1020 CGTATCATCGCTGATGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAG 961 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043 | ||||||| ||||| ||||| ||||| ||||| | || | ||||| || ||| Sbjct 960 GCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGAT 901 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103 || ||||| ||| | ||| || || | ||| | ||||| | || || Sbjct 900 CGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 841 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| |||| |||||||||||| ||| ||||||| ||||| ||||| || Sbjct 840 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 788 >seq2636 Length=32018 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/129 (79%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGA 111478 |||||||| |||||||| |||||||| || || ||||||||| ||| | |||| | | Sbjct 16854 GTAAAAATCTGGGATGGCAATGGATCGCGCGAATTTCTAGATAGCAGAGG--CTTGAC-A 16910 Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || ||| |||||||| || ||||| || || ||||||||||| |||||||| || Sbjct 16911 CACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGGGCC 16970 Query 111537 GACTACAAA 111545 || |||||| Sbjct 16971 GAATACAAA 16979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303281977053998