Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2512 273 3e-68
seq82 113 6e-20
>seq2512
Length=7492
Score = 273 bits (302), Expect = 3e-68
Identities = 1142/1775 (64%), Gaps = 33/1775 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 740 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 799
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 800 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 859
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| ||||| || || | ||||| || | || || ||||||| | |
Sbjct 860 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 919
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 920 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 979
Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 980 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1039
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 1040 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1099
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1100 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1159
Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 1160 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1218
Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 1219 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1277
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444
||| || || || | | || ||| | || || || || |
Sbjct 1278 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 1337
Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62502
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 1338 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1395
Query 62503 GAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62560
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 1396 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1452
Query 62561 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 1453 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 1511
Query 62620 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 1512 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1571
Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62734
||| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 1572 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 1631
Query 62735 AACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792
| ||||| | |||| || |||| ||||| || || |||| | | | |
Sbjct 1632 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 1691
Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852
||| | || || ||||| | ||| | ||||| || | || | ||| || |
Sbjct 1692 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 1751
Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 1752 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 1811
Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 62972
| | ||| | | ||| | | | || || || | || | |||| || ||
Sbjct 1812 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 1869
Query 62973 CGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030
| ||| | | ||| | ||| |||||||| || | |||| ||| ||||||||
Sbjct 1870 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 1929
Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63090
||||| || ||||| | | ||| || ||| | | || || ||||| ||||||||
Sbjct 1930 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 1989
Query 63091 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149
|||||||| | || ||| || ||||| | || | ||| || || || ||||
Sbjct 1990 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 2048
Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209
|| || || |||||| | | || ||| | ||||| || || | || | || |
Sbjct 2049 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 2108
Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269
| ||||| || |||||||| || || || | ||||||||| |||||||| |||||| |
Sbjct 2109 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 2168
Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329
||| || | || || ||||| |||| ||||| || | ||| || ||| ||||||
Sbjct 2169 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 2228
Query 63330 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389
| || | ||| ||||| || || || || |||||||||| | || ||| |
Sbjct 2229 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 2288
Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449
| | |||||||| || || || |||||||| ||| |||| | || || || || |
Sbjct 2289 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 2348
Query 63450 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509
| | || | || || || || | ||||| || ||||| || || |||
Sbjct 2349 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 2408
Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCT 63568
| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 2409 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 2467
Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
|| || |||||||| | ||| ||||| || | |||
Sbjct 2468 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 2502
>seq82
Length=17769
Score = 113 bits (124), Expect = 6e-20
Identities = 229/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 32881 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 32939
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 6877 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 6819
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|| | ||| || |||| || || ||||| || || ||||| || |||||||||
Sbjct 6818 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 6759
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 6758 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 6699
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 33115
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 6698 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 6639
Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 6638 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 6580
Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| |||||||| |||||||| ||||| | ||||||
Sbjct 6579 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633598029404400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |