Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq34 140 3e-28
seq3136 123 2e-23
seq2512 114 1e-20
seq662 89.7 4e-13
>seq34
Length=19952
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || |||||||| |||| || || || ||| || |
Sbjct 14017 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 14076
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || || ||||||||||| || ||||| |||||
Sbjct 14077 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 14136
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || |||||||| || | || ||| |||||| | ||||| ||||||
Sbjct 14137 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 14196
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| ||||||||
Sbjct 14197 ATCCAAAAGGAATCCAC 14213
>seq3136
Length=22676
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| || || || || | || | ||||||||| | |
Sbjct 19725 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 19666
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| ||| |||||||||||||||||||| ||||| || |||
Sbjct 19665 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 19606
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||||| |||||| | | || | || |||||||||
Sbjct 19605 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 19546
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 19545 ATTCAGAAGGA 19535
Score = 122 bits (134), Expect = 7e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||| | || || || || |||||||||| || || | |||| ||| | |||
Sbjct 20169 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 20110
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
|| |||| || || || ||||||||||||||||| || |||||||||||| | ||
Sbjct 20109 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 20050
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| || || ||||| | || ||| |||||| | ||| |||||||| |||||||||
Sbjct 20049 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAA 19990
Query 22411 TCCACCATACATTTAGT 22427
|||||| | || || ||
Sbjct 19989 TCCACCCTTCACTTGGT 19973
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || || |||| | || || || | |
Sbjct 19953 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 19894
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | ||| ||| || ||||| ||||||||||| ||||| || ||
Sbjct 19893 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 19834
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| ||||| || || || | |||||| |||||| | || || ||||||
Sbjct 19833 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 19774
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || ||||| ||||| | ||||| ||
Sbjct 19773 ATCCAGAAAGAGTCCACACTGCATTTGGT 19745
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || ||| ||||||| | ||| | | ||
Sbjct 20437 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 20378
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || |||||||| ||||| || || ||||| || | || || || ||||||
Sbjct 20377 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 20318
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | || ||| ||| ||| | ||| |||||||||||||| || || ||
Sbjct 20317 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 20265
>seq2512
Length=7492
Score = 114 bits (126), Expect = 1e-20
Identities = 575/899 (64%), Gaps = 33/899 (4%)
Strand=Plus/Plus
Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570
||||| | |||||||| ||| ||| |||| |||||||| |||| ||| |||
Sbjct 1463 TCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC 1522
Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630
| ||| |||||||||||||| || || ||||| || || |||| || | ||
Sbjct 1523 TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGA 1582
Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690
|| || | | | | ||| |||| ||| || ||| ||||| |||||| |
Sbjct 1583 GTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGG 1642
Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750
| | ||| || ||||| || ||| || ||| | | | || ||| |||||||||
Sbjct 1643 AGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATT 1702
Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTG 129810
|| | ||||||||| | ||||||||| | | |||||| || || ||| |||||
Sbjct 1703 TCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTG 1762
Query 129811 CAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTC 129870
|| ||||| ||||| | |||| | || | || || || ||| | |||| |||||
Sbjct 1763 CATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGG-- 1820
Query 129871 CTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGC 129926
| || ||| | | | || ||||| ||||| | | | | || ||||| ||
Sbjct 1821 -AGTACCAAAGCTTTTGGGCTTTGAT-GGTCTTGCGACCTCTACCTTCCTTCTCATAACT 1878
Query 129927 CACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACG 129983
| |||| || |||||| || ||| | ||| || |||| || |||||
Sbjct 1879 CTCATAGAGAGCTTCAAACTCGTCGCCATATAC---ATCAGCCAACCCAGGACATTCATT 1935
Query 129984 CGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042
|| ||||| | |||| || | | | | ||| || || ||||| || | ||| || |
Sbjct 1936 GGGGCACATTAGTGTCCA-ATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAA 1994
Query 130043 CCCACAGGGCGTACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098
||||| ||| || || | ||| |||| |||| |||| | || || | | |
Sbjct 1995 TCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT-TCCTTG----CCGTGGTTC-T 2048
Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156
||| || || ||||| ||| ||| || |||||||| || |||| ||| | ||| | ||
Sbjct 2049 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 2108
Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213
| || || ||| || |||||||| |||| | | | || ||| | ||||| |
Sbjct 2109 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 2168
Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273
||| | | | ||||||| | ||||| || | | ||| | ||| || |
Sbjct 2169 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 2228
Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCG 130332
| | | |||| | | ||||| || || || || ||| || |||| || || ||
Sbjct 2229 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 2288
Query 130333 CGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391
| || || |||||||| ||| | ||||| || || || || | | |||||| || ||
Sbjct 2289 TG-AGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGA 2346
>seq662
Length=26719
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || | ||||| | ||| || ||||
Sbjct 18007 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATTGACAATGTCAAGTCC 17948
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || ||||||||| | || || ||||| ||
Sbjct 17947 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 17888
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| | ||||| || ||| | || || ||||||||||||||
Sbjct 17887 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 17844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419706059899285
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