Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq34 140 3e-28 seq3136 123 2e-23 seq2512 114 1e-20 seq662 89.7 4e-13 >seq34 Length=19952 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || |||||||| |||| || || || ||| || | Sbjct 14017 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 14076 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||||||||| || ||||| ||||| Sbjct 14077 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 14136 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| || | || ||| |||||| | ||||| |||||| Sbjct 14137 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 14196 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| |||||||| Sbjct 14197 ATCCAAAAGGAATCCAC 14213 >seq3136 Length=22676 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || | || | ||||||||| | | Sbjct 19725 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 19666 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| ||| |||||||||||||||||||| ||||| || ||| Sbjct 19665 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 19606 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||||| |||||| | | || | || ||||||||| Sbjct 19605 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 19546 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 19545 ATTCAGAAGGA 19535 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||| | || || || || |||||||||| || || | |||| ||| | ||| Sbjct 20169 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 20110 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || |||| || || || ||||||||||||||||| || |||||||||||| | || Sbjct 20109 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 20050 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || || || ||||| | || ||| |||||| | ||| |||||||| ||||||||| Sbjct 20049 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAA 19990 Query 22411 TCCACCATACATTTAGT 22427 |||||| | || || || Sbjct 19989 TCCACCCTTCACTTGGT 19973 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | Sbjct 19953 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 19894 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| ||| || ||||| ||||||||||| ||||| || || Sbjct 19893 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 19834 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | |||||| |||||| | || || |||||| Sbjct 19833 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 19774 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || ||||| ||||| | ||||| || Sbjct 19773 ATCCAGAAAGAGTCCACACTGCATTTGGT 19745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || ||| ||||||| | ||| | | || Sbjct 20437 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 20378 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| ||||| || || ||||| || | || || || |||||| Sbjct 20377 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 20318 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| ||| ||| | ||| |||||||||||||| || || || Sbjct 20317 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 20265 >seq2512 Length=7492 Score = 114 bits (126), Expect = 1e-20 Identities = 575/899 (64%), Gaps = 33/899 (4%) Strand=Plus/Plus Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570 ||||| | |||||||| ||| ||| |||| |||||||| |||| ||| ||| Sbjct 1463 TCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC 1522 Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630 | ||| |||||||||||||| || || ||||| || || |||| || | || Sbjct 1523 TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGA 1582 Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690 || || | | | | ||| |||| ||| || ||| ||||| |||||| | Sbjct 1583 GTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGG 1642 Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750 | | ||| || ||||| || ||| || ||| | | | || ||| ||||||||| Sbjct 1643 AGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATT 1702 Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTG 129810 || | ||||||||| | ||||||||| | | |||||| || || ||| ||||| Sbjct 1703 TCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTG 1762 Query 129811 CAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTC 129870 || ||||| ||||| | |||| | || | || || || ||| | |||| ||||| Sbjct 1763 CATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGG-- 1820 Query 129871 CTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGC 129926 | || ||| | | | || ||||| ||||| | | | | || ||||| || Sbjct 1821 -AGTACCAAAGCTTTTGGGCTTTGAT-GGTCTTGCGACCTCTACCTTCCTTCTCATAACT 1878 Query 129927 CACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACG 129983 | |||| || |||||| || ||| | ||| || |||| || ||||| Sbjct 1879 CTCATAGAGAGCTTCAAACTCGTCGCCATATAC---ATCAGCCAACCCAGGACATTCATT 1935 Query 129984 CGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042 || ||||| | |||| || | | | | ||| || || ||||| || | ||| || | Sbjct 1936 GGGGCACATTAGTGTCCA-ATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAA 1994 Query 130043 CCCACAGGGCGTACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098 ||||| ||| || || | ||| |||| |||| |||| | || || | | | Sbjct 1995 TCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT-TCCTTG----CCGTGGTTC-T 2048 Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156 ||| || || ||||| ||| ||| || |||||||| || |||| ||| | ||| | || Sbjct 2049 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 2108 Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213 | || || ||| || |||||||| |||| | | | || ||| | ||||| | Sbjct 2109 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 2168 Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273 ||| | | | ||||||| | ||||| || | | ||| | ||| || | Sbjct 2169 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 2228 Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCG 130332 | | | |||| | | ||||| || || || || ||| || |||| || || || Sbjct 2229 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 2288 Query 130333 CGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 | || || |||||||| ||| | ||||| || || || || | | |||||| || || Sbjct 2289 TG-AGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGA 2346 >seq662 Length=26719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | ||||| | ||| || |||| Sbjct 18007 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATTGACAATGTCAAGTCC 17948 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || ||||||||| | || || ||||| || Sbjct 17947 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 17888 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | ||||| || ||| | || || |||||||||||||| Sbjct 17887 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 17844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419706059899285