Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1651 87.8 4e-12
>seq1651
Length=8323
Score = 87.8 bits (96), Expect = 4e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| |||| | || ||||||| |||||||| || ||
Sbjct 5680 GGTGAGGATCTTTGCAACTGTACTTTCAACTTGGCCTATGGTGCTAAGATTCTTCTCAAT 5739
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| | ||||||||| | || |||||||| ||| || || || |
Sbjct 5740 CAAACTCACCTCCGTCTGAAGCGTGGCCAACGATATGGTCTTTGCGGACCTAACGGTTCC 5799
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||| ||||| |||| || | ||||| || || ||
Sbjct 5800 GGAAAGTCCACTCTTATGCGTGCCATCAACAACGAACAAGTCGAAGGTTTCCCCAAGAAG 5859
Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|||||| | ||| |||| || |||||||| |||||||
Sbjct 5860 AGTGAGGTTAAGACTGTGTTCGTTGAGCACGATCTCGACTC 5900
Score = 87.8 bits (96), Expect = 4e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| ||||| | ||||| |||||||||| || ||||||||||| |
Sbjct 7052 CCAACTTTGGTTTGGACGCTGAGTTGGTTTCTCACTCTCGTATGTTGGGTCTTTCTGGTG 7111
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| |||| ||| || |||| |||||||| ||||| |||||||
Sbjct 7112 GACAGCGTGTCAAGGTTGTTCTCGCTGCTTGCTC-GTGGCAACGTCCTCATTTGATCGTC 7170
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||| ||||||||||| ||||||| ||
Sbjct 7171 CTTGACGAACCTACCAACTACTTGGACCGTGA 7202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027780317477049
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |