Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3136 107 2e-18 seq34 86.0 6e-12 >seq3136 Length=22676 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||||||||||| || || || |||||||||||||| | Sbjct 19988 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 20047 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||| ||||| |||||||| ||||| || ||||| ||| || || | | Sbjct 20048 AAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACA 20107 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||| | || | || || ||||| ||||| || Sbjct 20108 TTG-TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTT 20166 Query 138600 TAC 138602 || Sbjct 20167 GAC 20169 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | ||||||||||||||||||||||||||| Sbjct 20235 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 20294 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || |||||||| || | |||| | |||||||||||||| || Sbjct 20295 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 20354 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | |||| | || | ||| ||| | ||||| || Sbjct 20355 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGAC 20413 Query 138567 CTCGA 138571 ||||| Sbjct 20414 CTCGA 20418 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | ||||| || || ||||||||||| Sbjct 19727 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 19786 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| ||||| ||||| | | |||| ||||| || |||||||| || Sbjct 19787 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 19846 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| ||| ||| | | || | ||| || | |||||| ||| Sbjct 19847 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 19906 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || || || || ||||| Sbjct 19907 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||| ||||||||||| || | ||| | || | ||||| | || || || | | Sbjct 19534 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAA 19592 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAA 138539 |||| | |||||||||||||| || ||||| || ||||| ||| | |||| || | Sbjct 19593 AGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTGACA 19651 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||| ||||| || | || | || || ||||||| ||| || Sbjct 19652 TTG-TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTT 19710 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19711 GACGAAGATCTGCAT 19725 >seq34 Length=19952 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || || || |||||||| || |||| Sbjct 14210 GATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCG 14151 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || || || || || || || || ||||| ||| || || | | Sbjct 14150 AAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 14091 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | || || ||||||| || | |||||||| || || ||||| Sbjct 14090 TTG-TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTT 14032 Query 138600 TACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 14031 GACGAAGATCTGCATGACT 14013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496235794132080