Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2512 113 6e-20 seq82 105 8e-18 >seq2512 Length=7492 Score = 113 bits (124), Expect = 6e-20 Identities = 863/1380 (63%), Gaps = 34/1380 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 741 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 800 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||| | | |||||| || | | |||| | ||| || || |||| Sbjct 801 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 860 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | |||||| ||| || || || | ||| || ||||| || ||||| | || || Sbjct 861 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 919 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 920 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 978 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | || ||||| ||||| ||||| | || || | | |||||| | | ||| Sbjct 979 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 1038 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| | || || | ||||||| | || || ||||| || || || Sbjct 1039 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 1098 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || | | || | ||| |||||||| | |||||||| ||||||||||| ||| || Sbjct 1099 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 1157 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 | | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| || Sbjct 1158 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 1217 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057 | | ||| || ||| | | |||||||| | || | || | | ||| Sbjct 1218 CGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1277 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 ||| ||||||| | || || || | || | || || || || | ||||| Sbjct 1278 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTC 1332 Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177 ||| | ||| ||| || | || | || | || ||||| || || || Sbjct 1333 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 1392 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCAC 116235 || || || || || | |||||| || || ||||| | | || | | Sbjct 1393 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 1452 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||| || |||| || |||||||| ||||||| | || || ||||| | | ||| Sbjct 1453 CAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTG 1510 Query 116296 GACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||||| || ||| ||||| || | || | || || | | | || | ||| | Sbjct 1511 CTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 1569 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCAT 116413 | || || | || | || |||||||||| | |||| || | | ||| ||||| Sbjct 1570 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCAT 1626 Query 116414 TG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 ||| | | || || || || || |||| ||||| || | ||||| | Sbjct 1627 GTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGC 1686 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 || ||| || | |||||| || |||||||| || || ||||||||| | ||||||||| Sbjct 1687 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTG 1746 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 || ||| |||| || ||||||||||| ||||| |||| | || ||||| ||||| Sbjct 1747 GTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTG 1806 Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCC 116648 | || |||||| | | ||| | | |||| | ||| ||| ||| || Sbjct 1807 AGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACC 1863 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708 |||| ||| || | ||||| || |||||||| || || | || | | ||| Sbjct 1864 TTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCC 1923 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || | || || || | || | ||| | | || ||||| ||||||||||| Sbjct 1924 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 1983 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 ||| || || ||||| | || |||| ||||| || ||| ||||||| | || || Sbjct 1984 GAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 2043 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | |||| || || | | ||| |||||||| || || || || || || Sbjct 2044 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 2103 >seq82 Length=17769 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | || Sbjct 7136 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 7077 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| ||| Sbjct 7076 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 7017 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||||| ||||||| Sbjct 7016 GCAAAAGCAACCAGACGCTGAGCAAAGG 6989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613474308345240