Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq82 96.9 6e-15
seq2512 89.7 8e-13
>seq82
Length=17769
Score = 96.9 bits (106), Expect = 6e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| ||||||||||| |||||| || || || || || || ||||||| ||| |||||
Sbjct 7160 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 7101
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| |||| || | ||| | |||||| |||||||| || || | || || | ||
Sbjct 7100 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 7041
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| || || ||||| || || || | || | |||| | | |||
Sbjct 7040 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 6981
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131
|||| || |||| || ||||| || || |||||
Sbjct 6980 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTT 6943
>seq2512
Length=7492
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAGTACAT 203895
||||| || || ||||||||||| | || | |||| || | | || ||||||||
Sbjct 728 TCTTGATCGACGGTGAACTGAATAG-GTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 786
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
|||||||| || ||| | ||| ||| | |||||||||| | |||| || |
Sbjct 787 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 846
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
|||||| |||||||||||||| || || ||||| | |||||| || ||||| |
Sbjct 847 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTC-AACAAAGGCACCACGATCAG 905
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061
||||||| | | ||| || || ||||||||||| || ||||||
Sbjct 906 CGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 952
Score = 87.8 bits (96), Expect = 3e-12
Identities = 195/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTC--TTTCACC-CT 205164
|| ||| ||||||| ||||| ||||| || | ||| ||| | ||| ||||| | |
Sbjct 1918 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCA-ATCCG--CGTTCTTTTCAACACG 1974
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| || || || ||||||| | | || || ||||||||||| | | | | ||
Sbjct 1975 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 2034
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284
| || |||||||| | |||||| | | || || |||||||| ||||| |
Sbjct 2035 CTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 2094
Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344
| || || | ||| || || | |||||| ||||| ||||| || | || |
Sbjct 2095 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 2154
Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||||||||| |||||||| || | ||||||| | | ||||| ||
Sbjct 2155 ATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGT 2202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795112569741840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |