Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq34 125 2e-23 seq3136 116 9e-21 seq2512 84.2 5e-11 >seq34 Length=19952 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||||||||| | | || | ||||||| Sbjct 14228 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 14169 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 14168 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 14109 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | ||| || || | ||||| || Sbjct 14108 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 14049 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || Sbjct 14048 TTACCCGTGAGGGTTTTGACGAAGATCTG 14020 >seq3136 Length=22676 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| ||||||||||| | ||||||||| ||| || Sbjct 20241 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTA 20300 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||| | ||||| |||||||| |||||| Sbjct 20301 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 20360 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||| || | | || || || | Sbjct 20361 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGG 20420 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 20421 GTGATGGTCTTGCCGGTGA 20439 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || ||||| || |||| ||||||||| | | ||| | ||||| Sbjct 19742 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 19801 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| ||||| ||||||||||| || || || || Sbjct 19802 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 19861 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| |||| ||| |||| | || || ||||| ||||| ||| Sbjct 19862 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 19921 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 19922 TTTCCGGTAAGTGTCTTGACGAAGATTTG 19950 >seq2512 Length=7492 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796 || ||||||||| || ||| |||| || |||||||| | ||||| || | || Sbjct 1738 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 1794 Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856 ||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | | Sbjct 1795 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 1854 Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916 |||| ||||| || || || ||||||||||| |||| || || | || || | || Sbjct 1855 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1914 Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976 | | || ||| ||| || || || | || |||||| | | | || || | Sbjct 1915 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 1974 Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012 |||||||||||| || | | |||| | || ||||| Sbjct 1975 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178856814942363