Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq82 140 3e-28
seq34 123 2e-23
seq3136 120 3e-22
seq662 89.7 5e-13
>seq82
Length=17769
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || ||||||||| || || |||| ||||| | ||||||||| ||||| ||
Sbjct 6828 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 6769
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | ||| |||||||| || ||
Sbjct 6768 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 6709
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || |||||| || ||||| || || || ||||| |||||||| |||
Sbjct 6708 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 6649
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || || | | | ||| ||| | |||||| |||| ||| | ||| ||
Sbjct 6648 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 6589
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| |||||||||||
Sbjct 6588 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 6553
Score = 93.3 bits (102), Expect = 4e-14
Identities = 340/521 (65%), Gaps = 11/521 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || || || || | ||||| || || || || || || |
Sbjct 7455 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7396
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708
| ||| ||| | ||| || || || |||||||| | ||||| ||| || |
Sbjct 7395 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 7336
Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767
| || |||| || || | ||||| |||||||||||||||||| ||| |||||
Sbjct 7335 AAGAG--CGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC- 7279
Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || || |||| || || || ||||| | || ||| ||||| | |
Sbjct 7278 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 7220
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || || |||| || || || | | ||| || || ||| ||| || ||
Sbjct 7219 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 7160
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||| || |||||| ||| | || || || | ||| ||||| || ||| ||
Sbjct 7159 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 7100
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
|||| | || | ||| | ||| || || |||||||| || || | ||||| ||
Sbjct 7099 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 7040
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
||||||| |||||| || || || ||||| ||||| |||| | || || | | ||
Sbjct 7039 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 6980
Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105
|| || | ||||| | | ||||| ||||| || |||||
Sbjct 6979 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 6940
>seq34
Length=19952
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || |
Sbjct 14017 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 14076
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| |||||||| || | || ||
Sbjct 14077 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 14136
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 14137 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 14196
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || ||||| || |||
Sbjct 14197 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 14232
>seq3136
Length=22676
Score = 120 bits (132), Expect = 3e-22
Identities = 153/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| ||| ||| | | | | |||| ||||
Sbjct 20439 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG--TAAA 20382
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || || | || || |||||||||||| | ||||||||||| | || | ||| ||
Sbjct 20381 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 20322
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|||||| || || || | || ||| | | |||||||||||| |||||||| | || ||
Sbjct 20321 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 20262
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| | | |||||
Sbjct 20261 CCATCTCGTCCTCCGTCTTCGTGGCGG 20235
Score = 113 bits (124), Expect = 5e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| | || |||||| | |||||| | |
Sbjct 20171 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 20112
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| ||||| | || ||||| || | |
Sbjct 20111 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 20052
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | ||| || ||||| || || || | |||||||| | |||||||||||||||||| |
Sbjct 20051 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 19992
Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458
|| | || || || |||||||| ||
Sbjct 19991 AATCCACCCTTCACTTGGTGCTCCG 19967
Score = 82.4 bits (90), Expect = 8e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || || ||||| | || || ||| | |
Sbjct 19953 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 19894
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | ||| ||| |||| || || ||||| || || | |||||
Sbjct 19893 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 19835
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || || || | || || || || || || || | ||||| || ||||||||
Sbjct 19834 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 19775
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| || || | || ||||||||||| || |||
Sbjct 19774 CATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGT 19738
>seq662
Length=26719
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||||| ||||| || || || ||||| || ||||||||| | || |||||| || | ||
Sbjct 18029 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 17970
Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | | || || |||| ||||| |||||||||||| | ||||||||
Sbjct 17969 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 17910
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
|| | || | ||| || || || || || |||| || ||||| |||||||||||
Sbjct 17909 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 17850
Query 38426 CCAAAAGG 38433
|||||||
Sbjct 17849 TCAAAAGG 17842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500145984485760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |