Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2512 244 1e-59 >seq2512 Length=7492 Score = 244 bits (270), Expect = 1e-59 Identities = 1161/1818 (64%), Gaps = 59/1818 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || |||||| || | |||||| |||| Sbjct 773 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 832 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || |||| || ||||| ||| |||||||| ||| Sbjct 833 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 892 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | ||||| || || Sbjct 893 GCACCACGATCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 950 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | || |||||||| ||||| || | Sbjct 951 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAG 1010 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || || | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 1011 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 1070 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| |||| || ||||| || | | | | ||| |||||||| | Sbjct 1071 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 1127 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||||||||| || || ||| | ||||| | |||| ||||||||||| Sbjct 1128 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 1187 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || |||||| || ||| | || Sbjct 1188 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTAT 1247 Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122 ||||||| | | | | ||| | || | |||||||||| ||||||| | ||||| Sbjct 1248 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 1306 Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | ||| | ||| || || | |||||||||| ||| | | ||| | ||| | Sbjct 1307 GAGACAGGTGAG--CCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 1364 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | ||||| || || ||||| ||||| || || | | |||||||| Sbjct 1365 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 1424 Query 106242 CATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296 || ||| ||||||| || || | || |||| |||| || ||||||||||| Sbjct 1425 CAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAGACCTTGAAC 1479 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAA 106355 ||| | | | ||||||| || || | ||| ||||| || ||| ||||| || Sbjct 1480 ACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGT 1538 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 | || ||||||||| ||| | ||| || ||| | | || | || ||||| | Sbjct 1539 AGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCT 1598 Query 106416 TTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATG 106472 ||| |||| |||| | ||| ||||| ||| | |||| || || || || | Sbjct 1599 TTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAG 1655 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 |||| || || ||| ||||| | | ||| || | ||||||||| ||||| | Sbjct 1656 CCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAAT 1715 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| || ||| || || | ||||||||||| ||||| |||||||| |||||||||| Sbjct 1716 TGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGT 1775 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGG 106652 | |||||| | || | || ||||| || || | || |||||| | | ||| | | Sbjct 1776 AAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTT 1835 Query 106653 CGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 ||| | |||| ||| | | || ||| ||| || | ||||| |||| Sbjct 1836 GGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTT 1892 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAG 106766 ||||||| || || | || | | || || | | ||| || || | || | Sbjct 1893 CAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTG 1949 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | | || ||||| ||||||||||| || || |||||||||| || | | Sbjct 1950 TCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGA 2009 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 | ||||| | || | ||||| | || ||||| ||| | || |||||||| | Sbjct 2010 AAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGA 2069 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 106940 | ||| |||||||| ||||||||||||||||| | || | ||||| | Sbjct 2070 AAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTC 2126 Query 106941 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 107000 || |||| | || || | || ||| || || || || ||||| || | || || | Sbjct 2127 CACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGT 2186 Query 107001 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || | ||| || || || || | | |||| | | || |||| | Sbjct 2187 TGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGA 2246 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||||| ||||| || ||||| ||||| | | || || |||| |||| Sbjct 2247 GACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATAC 2306 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || |||||||| | | || |||||||| || | ||| | | ||||| Sbjct 2307 CATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTG 2366 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 ||||||| ||| || || || | ||||| |||| || | | |||||| || | Sbjct 2367 TACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTG 2425 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | | || || || || ||||| || || | ||| |||||||| | | Sbjct 2426 TAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATC 2485 Query 107300 ATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAG 107358 || | || || ||| | | |||||||| || |||| || | || ||| || Sbjct 2486 ATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAG 2544 Query 107359 GGTTTTGAGACCAAAGTA 107376 ||| |||| || ||||| Sbjct 2545 GGTCTTGAATCCGAAGTA 2562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589949169654360