Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 167 3e-36 >seq2 Length=43817 Score = 167 bits (184), Expect = 3e-36 Identities = 215/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | |||||| | || | |||||||||||||| ||| Sbjct 2454 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 2513 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 2514 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 2573 Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||| || | | | || || |||| || ||||| ||||||||||| ||||| | Sbjct 2574 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 2631 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 |||||||||| || || || || || ||||| ||||||||||||| ||| ||||||||| Sbjct 2632 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 2691 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039 ||||| | ||||||||| | || |||||| | | ||||| | ||||| || Sbjct 2692 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 2746 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930 |||||||||||||||||| |||| |||||||| || | | |||| | | | | || Sbjct 3645 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAGCCAGAGATTAAGGCTGCT-TG 3703 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 | | || |||||| | | || ||||| || || | || || || ||| | ||||| || Sbjct 3704 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 3763 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | || | || ||||| |||||| ||||| |||||||| ||| | || || Sbjct 3764 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 3823 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 |||||||||||||||||||| || ||||| || || || || || || |||||| Sbjct 3824 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 3878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579181746953760