Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 161 2e-34
seq34 129 1e-24
seq662 116 8e-21
>seq3136
Length=22676
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | |||
Sbjct 19522 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 19581
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | ||| |||||||| || || || || || ||||||||||| ||
Sbjct 19582 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 19641
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| |||||| || |||||||| || || ||||||||| | |||| |||||||| ||
Sbjct 19642 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGT 19701
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || ||||| | |||||
Sbjct 19702 CAAAGTCTTGACGAAGATCTGCAT 19725
Score = 129 bits (142), Expect = 1e-24
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| ||
Sbjct 19978 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 20037
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| |||||||| | |||||||| || |||||||| || || ||||| || || ||
Sbjct 20038 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTT 20097
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| || || || ||||| || | ||||| || ||
Sbjct 20098 GGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 20157
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 20158 GAGAGTCTTGACGA 20171
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || ||||||||||| || || ||||| || | ||||| | ||||| || || |||
Sbjct 19751 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCAAGTTGC 19810
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || |||||||| ||||| ||||| || || || || || || ||||| || |||
Sbjct 19811 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTT 19870
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| ||||| || ||||| || || || || || | || | |||||||| ||
Sbjct 19871 GATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTTCCGGTA 19930
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 19931 AGTGTCTTGACGAAGATTTGCAT 19953
Score = 102 bits (112), Expect = 2e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
|| || || ||||| ||||| |||||||| ||||| ||| |||| || | ||||||||
Sbjct 20253 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAG-GTACGGCCATCTTC 20311
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || ||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 20312 AAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 20371
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| || ||| ||||| || ||||| ||
Sbjct 20372 AATCTTGCTCTTTACGTTGTCGATGGTATC 20401
>seq34
Length=19952
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| ||
Sbjct 14220 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 14161
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || ||||| || || || || || || || ||||| || || ||
Sbjct 14160 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 14101
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || || ||| || || ||||| | || || || ||
Sbjct 14100 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 14041
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||||| ||||| | |||||
Sbjct 14040 GAGGGTTTTGACGAAGATCTGCAT 14017
>seq662
Length=26719
Score = 116 bits (128), Expect = 8e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|||||||| ||||| || | ||| |||| || || ||||| ||||| || ||||||||
Sbjct 17844 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17903
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||||||||| || ||||| || || ||||| || || || |||||| || |||
Sbjct 17904 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17963
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || |||||||| | |||||||| || | || || |||||
Sbjct 17964 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 18022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109420630865663
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |