Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq473 131 1e-24 seq449 98.7 8e-15 seq429 98.7 8e-15 >seq473 Length=38710 Score = 131 bits (144), Expect = 1e-24 Identities = 316/475 (67%), Gaps = 4/475 (1%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 2364 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 2305 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 2304 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 2245 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 2244 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 2185 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 2184 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 2125 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 2124 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 2067 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 2066 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 2007 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 2006 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 1947 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || |||||||| ||||| |||| || || Sbjct 1946 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 1892 Score = 131 bits (144), Expect = 1e-24 Identities = 316/475 (67%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 36347 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 36406 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 36407 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 36466 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 36467 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 36526 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 36527 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 36586 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 36587 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 36644 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 36645 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 36704 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 36705 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 36764 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || |||||||| ||||| |||| || || Sbjct 36765 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 36819 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 1353 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 1294 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 1293 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 1234 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 1233 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 1174 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 1173 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 1114 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 1113 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 1054 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 1053 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 994 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 993 AACGGTATCATGAATGTCTCTGCT 970 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 37358 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 37417 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 37418 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 37477 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 37478 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 37537 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 37538 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 37597 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 37598 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 37657 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 37658 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 37717 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 37718 AACGGTATCATGAATGTCTCTGCT 37741 >seq449 Length=22889 Score = 98.7 bits (108), Expect = 8e-15 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| || | |||||||| |||||| | | || | || ||| Sbjct 21969 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 22025 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||| ||| | | || || || | ||||| | || | |||||||| | Sbjct 22026 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 22081 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || ||||||| ||||||| || | ||| ||||| || ||| ||| Sbjct 22082 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 22141 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||||||| | || || || | || || ||| | | || |||||| | | Sbjct 22142 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 22201 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | || || ||||| || || | ||||||| || | || || Sbjct 22202 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 22261 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 |||||| || || || ||||| || || |||||||||||| | ||||| | || ||||| Sbjct 22262 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 22321 Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| ||||| || || ||| |||| || Sbjct 22322 TGGAATCTTGAAGGTTACCGCTGGTGACAA 22351 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 20833 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 20892 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 20893 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 20952 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 20953 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 20990 >seq429 Length=29046 Score = 98.7 bits (108), Expect = 8e-15 Identities = 247/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| ||||| |||||||| | || || || | ||||| ||| | Sbjct 636 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 577 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| ||||| | || ||||| ||||| || || | || | | ||| | Sbjct 576 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 517 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073 | |||| ||| || ||| | | | | || || || | || || || | Sbjct 516 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 458 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||||| | | ||| | || || || |||||||| || |||| || || |||||||| Sbjct 457 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 398 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||||||| | ||||| || ||| | | || || | ||||| || || || Sbjct 397 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 338 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || | |||| |||| || |||||||||||||| || ||||| || ||||||| | Sbjct 337 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 278 Query 552254 TATTCTTTCTGGA 552266 ||| || || ||| Sbjct 277 TATCCTCTCAGGA 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029069178336610