Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq34 134 9e-27
seq662 122 6e-23
seq3136 104 2e-17
>seq34
Length=19952
Score = 134 bits (148), Expect = 9e-27
Identities = 162/218 (74%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||| || ||||| ||||| || ||| |||| ||||
Sbjct 14228 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 14169
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||||||||| |||||||| || | || | |||||||||||
Sbjct 14168 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 14109
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| || || || || | ||| ||
Sbjct 14108 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 14053
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
||| || ||||||||||| || || |||||||||||||
Sbjct 14052 GGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGA 14015
>seq662
Length=26719
Score = 122 bits (134), Expect = 6e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| |||||||| ||||| || ||| | || | || || |||||||||||||||||||
Sbjct 17842 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 17901
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| ||||| | || | ||||||||||| | || || |||||
Sbjct 17902 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17961
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | ||| || |||||| |||| ||| |||||||||||||| |||||||| || |
Sbjct 17962 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 18021
Query 34968 AG 34969
||
Sbjct 18022 AG 18023
>seq3136
Length=22676
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| || | ||| ||| ||||| ||||| ||||| ||||| |||| ||||
Sbjct 19742 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 19801
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||| || ||||||||||| | || | |||||||| ||
Sbjct 19802 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 19861
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||| ||| | || | || | ||| || || | || || |||
Sbjct 19862 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 19921
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || ||||| |||||
Sbjct 19922 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||||||||||||||||||| || || || || | | ||||
Sbjct 19514 AGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCC 19573
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| || ||||||| ||| || ||||| | || | |||||||||||
Sbjct 19574 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 19633
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||||| | || | || | || || || | || ||||||
Sbjct 19634 TGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTC 19693
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| || |||||||||||
Sbjct 19694 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 19725
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| || || || ||||| ||||| ||| |||| ||||
Sbjct 19970 AGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 20029
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || |||||||||| ||||| || || | || | |||||||||||
Sbjct 20030 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCC 20089
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | |||||| |||| || ||
Sbjct 20090 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGAT 20145
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || ||||| ||||| ||
Sbjct 20146 GGTCTTGCCAGTGAGAGTCTTGAC 20169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325675775324891
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |