Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq473 206 2e-47 seq1181 87.8 1e-11 seq449 87.8 1e-11 >seq473 Length=38710 Score = 206 bits (228), Expect = 2e-47 Identities = 898/1402 (64%), Gaps = 19/1402 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || || Sbjct 971 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 1030 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 1031 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1090 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 ||| ||| ||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 1091 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1150 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 1151 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 1210 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || |||||||| || || | ||||||||| | || | |||||| | || | || Sbjct 1211 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1270 Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | || || || | || | |||| || ||||| || || | ||||| || Sbjct 1271 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 1330 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 1331 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1390 Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 1391 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1447 Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 1448 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 1506 Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 | || || | |||| |||||||| ||||| ||| | ||| | || | | Sbjct 1507 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1565 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || || || ||||| | ||| || | ||| || | || || | || || || || | Sbjct 1566 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 1625 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 1626 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1684 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 1685 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1744 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || ||||| ||||| | ||| | || | || | | |||| || | || || Sbjct 1745 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 1804 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| | ||| |||| |||||| |||||| ||||| | ||| || || || || || Sbjct 1805 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 1864 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 || || || || || | ||| || |||| ||||| ||||| || || || Sbjct 1865 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 1924 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || | | |||||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 1925 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 1984 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495 || ||| | || ||||| |||||||| | || || | |||| || | || | || Sbjct 1985 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACGGTTCCACCGAGGTA 2043 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | |||| || || | ||| || || |||| ||| || | | Sbjct 2044 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 2103 Query 282556 TTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 |||||| | || |||| | ||||||| ||| || ||| | || | Sbjct 2104 TTGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 2162 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || ||||| | | |||||||| | ||| || | |||| || | | ||| | Sbjct 2163 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 2222 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || | || || || || || | || |||| | || || | Sbjct 2223 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 2282 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || | Sbjct 2283 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 2342 Query 282795 CTTGATCATTCGCAATAATTTC 282816 |||| || || || |||||||| Sbjct 2343 CTTGGTCGTTGGCGATAATTTC 2364 Score = 206 bits (228), Expect = 2e-47 Identities = 898/1402 (64%), Gaps = 19/1402 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || || Sbjct 37740 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 37681 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 37680 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 37621 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 ||| ||| ||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 37620 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 37561 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 37560 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 37501 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || |||||||| || || | ||||||||| | || | |||||| | || | || Sbjct 37500 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 37441 Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | || || || | || | |||| || ||||| || || | ||||| || Sbjct 37440 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 37381 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 37380 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 37321 Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 37320 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 37264 Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 37263 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 37205 Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 | || || | |||| |||||||| ||||| ||| | ||| | || | | Sbjct 37204 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 37146 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || || || ||||| | ||| || | ||| || | || || | || || || || | Sbjct 37145 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 37086 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 37085 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 37027 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 37026 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 36967 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || ||||| ||||| | ||| | || | || | | |||| || | || || Sbjct 36966 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 36907 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| | ||| |||| |||||| |||||| ||||| | ||| || || || || || Sbjct 36906 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 36847 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 || || || || || | ||| || |||| ||||| ||||| || || || Sbjct 36846 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 36787 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || | | |||||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 36786 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 36727 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495 || ||| | || ||||| |||||||| | || || | |||| || | || | || Sbjct 36726 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACGGTTCCACCGAGGTA 36668 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | |||| || || | ||| || || |||| ||| || | | Sbjct 36667 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 36608 Query 282556 TTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 |||||| | || |||| | ||||||| ||| || ||| | || | Sbjct 36607 TTGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 36549 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || ||||| | | |||||||| | ||| || | |||| || | | ||| | Sbjct 36548 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 36489 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || | || || || || || | || |||| | || || | Sbjct 36488 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 36429 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || | Sbjct 36428 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 36369 Query 282795 CTTGATCATTCGCAATAATTTC 282816 |||| || || || |||||||| Sbjct 36368 CTTGGTCGTTGGCGATAATTTC 36347 >seq1181 Length=31466 Score = 87.8 bits (96), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || |||||||| | | ||||| ||||||||||||||||| ||| | ||||| ||| Sbjct 13111 GGAAAGGAAGGTCGGCTGCGTGGAAACTTGATGGGAAAGCGTGTGGATTTCTCTGCTCGT 13170 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || ||||||||| ||||||||| | | ||| | || || ||||| || | | ||| Sbjct 13171 ACCGTTATTACTGGTGATCCTAACTTATCGCTCGACGAGGTCGGTGTGCCCCGAAGTATC 13230 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455 || | || || || | ||||| ||||| || ||||| ||| Sbjct 13231 GCCAGAATCCTGACATACCCCGAAACCGTAACTCCACTCAATATCGAT 13278 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 |||||| |||||||| | |||||||||||||||||| | || |||| || | || || Sbjct 14553 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 14612 Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251 || || |||||||| |||||| | |||||||| ||||||||| | | | Sbjct 14613 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAAGCTCTTGAAGATGTCATGGCGAA 14672 Query 435252 ATATGATGGTACAGTGAGAAA 435272 |||||| |||||||| |||| Sbjct 14673 ATATGACGGTACAGTCCGAAA 14693 >seq449 Length=22889 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 |||||| || || || |||| || | ||||| || | |||||||||||||| | || Sbjct 21030 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 20971 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | |||| || || || | |||||||| ||||| | || | ||||| || || | Sbjct 20970 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 20911 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 | ||| |||||||| || |||||| ||||| || ||| | || ||||| | ||| Sbjct 20910 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 20851 Query 282868 AATACCAATAGCAATTTT 282885 ||||| || | ||||| Sbjct 20850 GATACCGATGACTATTTT 20833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740419828225314