Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2512 181 3e-40
seq82 122 2e-22
>seq2512
Length=7492
Score = 181 bits (200), Expect = 3e-40
Identities = 381/562 (68%), Gaps = 7/562 (1%)
Strand=Plus/Minus
Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579
|| ||||| || | | || || || ||| |||||| |||||||||||| | || ||
Sbjct 2346 TCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTATTTATGATACCCTCAAG 2287
Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639
| |||| | || |||||||| ||||||| |||||| | || |||| || ||
Sbjct 2286 ACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGT 2227
Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTT 110698
| | || ||| | ||||| | || ||| || |||| | | | || || ||| |
Sbjct 2226 GCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAACGGCA-TCGTACCGATGCT 2168
Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755
| |||| ||||| ||||||| | ||| || | |||||||| || | | ||| |
Sbjct 2167 ACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGC 2108
Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815
|||||| ||||||| || |||||||| ||||| | || || ||| | || || || ||
Sbjct 2107 ATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAA 2048
Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875
|| || || |||||| | || |||||| | || ||||| |||||||| | ||
Sbjct 2047 GAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGA 1988
Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTT 110934
| | |||||||| |||||| || | || | | || ||| | || ||||| || || |
Sbjct 1987 TCTCTTCATGAAGCGTGTTGAAAAGAACGCGGAT-TGGACACTAATGTGCCCCAATGAAT 1929
Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994
|||||| | ||||||||||||| | |||||||||| || || || | ||||| |
Sbjct 1928 GTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGA 1869
Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054
| ||||| | |||||| || ||| ||| | ||||||| | || || ||
Sbjct 1868 AGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGG 1809
Query 111055 CACAAGTTGAAACTGGAACTcc 111076
| ||| ||| || |||| |||
Sbjct 1808 CTCAAACTGAGACCGGAAATCC 1787
>seq82
Length=17769
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| |||||||| || |||||| | | |||||||||||| | | |||
Sbjct 6929 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6988
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | || || ||||||||| |||||| || || ||||| || | |
Sbjct 6989 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 7048
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||||| ||||| ||||||||||| |||||| |||| ||| | || ||||||
Sbjct 7049 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7108
Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
| ||||||| | ||||||| | ||||| || || ||
Sbjct 7109 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 7148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186747581298729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |