Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2512 181 3e-40 seq82 122 2e-22 >seq2512 Length=7492 Score = 181 bits (200), Expect = 3e-40 Identities = 381/562 (68%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| || | | || || || ||| |||||| |||||||||||| | || || Sbjct 2346 TCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTATTTATGATACCCTCAAG 2287 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 | |||| | || |||||||| ||||||| |||||| | || |||| || || Sbjct 2286 ACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGT 2227 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTT 110698 | | || ||| | ||||| | || ||| || |||| | | | || || ||| | Sbjct 2226 GCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAACGGCA-TCGTACCGATGCT 2168 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755 | |||| ||||| ||||||| | ||| || | |||||||| || | | ||| | Sbjct 2167 ACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGC 2108 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 |||||| ||||||| || |||||||| ||||| | || || ||| | || || || || Sbjct 2107 ATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAA 2048 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || || |||||| | || |||||| | || ||||| |||||||| | || Sbjct 2047 GAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGA 1988 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 | | |||||||| |||||| || | || | | || ||| | || ||||| || || | Sbjct 1987 TCTCTTCATGAAGCGTGTTGAAAAGAACGCGGAT-TGGACACTAATGTGCCCCAATGAAT 1929 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 |||||| | ||||||||||||| | |||||||||| || || || | ||||| | Sbjct 1928 GTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGA 1869 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 | ||||| | |||||| || ||| ||| | ||||||| | || || || Sbjct 1868 AGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGG 1809 Query 111055 CACAAGTTGAAACTGGAACTcc 111076 | ||| ||| || |||| ||| Sbjct 1808 CTCAAACTGAGACCGGAAATCC 1787 >seq82 Length=17769 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| |||||||| || |||||| | | |||||||||||| | | ||| Sbjct 6929 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6988 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | || || ||||||||| |||||| || || ||||| || | | Sbjct 6989 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 7048 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||| ||||| ||||||||||| |||||| |||| ||| | || |||||| Sbjct 7049 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7108 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| | ||||||| | ||||| || || || Sbjct 7109 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 7148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186747581298729