Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3136 86.0 6e-12 seq34 86.0 6e-12 >seq3136 Length=22676 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || |||||||| || || ||||| ||| | | || | || || |||||||||||| Sbjct 20088 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 20029 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||| | | | | ||||| ||||| || ||||||||||||||| |||| || ||| Sbjct 20028 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 19972 >seq34 Length=19952 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | || || ||| | ||||| |||| || ||| || Sbjct 14016 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 14075 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || || || || || ||||| || || || ||||| Sbjct 14076 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 14135 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | || |||||| ||||||||||||| | | | ||| ||||| Sbjct 14136 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 14195 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| |||||||| |||| || || Sbjct 14196 CATCCAAAAGGAATCCACTCTTCACTTGGT 14225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445070537376480