Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2446 116 3e-21
>seq2446
Length=24130
Score = 116 bits (128), Expect = 3e-21
Identities = 324/493 (66%), Gaps = 13/493 (3%)
Strand=Plus/Plus
Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500
|||||||||||| | | ||||| ||||| || || || ||||||||| | ||| |
Sbjct 9458 AATGGTCCTGAAGTACTGAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 9517
Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559
|| || || || || |||| | | || | | || | | | ||| ||| || || ||
Sbjct 9518 TTCGCAGATGCAGA-GAAGGAGTACAAGGAGAAAGGAGACGAGAGTGGTTTACATATCAT 9576
Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610
|| | || ||| | ||||| | |||||||||||||| ||| | ||
Sbjct 9577 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 9636
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
|| || ||||| |||||||||||| | ||||| || | || |||||| |||| ||
Sbjct 9637 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 9696
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
|| || ||| | ||||||| ||||||||| | |||| | || || || ||| |
Sbjct 9697 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 9756
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
|| || || || ||||| | | || ||||| ||| || |||||| || | |
Sbjct 9757 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 9816
Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850
| | ||| | || || || ||||||| ||||| | || ||| || | || |||||
Sbjct 9817 GCAGATTCTCAAGATTCACACATCAAAGATGCGCGACAACAACGTTATGGATCCAGATGT 9876
Query 19851 AGATCTAGAAGAAATTGCAGCGGCTACCAAA-AACTATAGCGGCGCAGAACTTGAGGGAT 19909
| | | | |||| |||| | ||| |||| |||| || |||||| ||| ||
Sbjct 9877 AAACGTTGCAGAACTTGC-TCACCTAACAAAGAACTTCTCAGGAGCAGAAATTGGAGGTC 9935
Query 19910 TAGTGAGGGCCGC 19922
|||| | | ||||
Sbjct 9936 TAGTCAAGTCCGC 9948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397435224105445
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |