Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2512 123 2e-23
seq3136 107 2e-18
>seq2512
Length=7492
Score = 123 bits (136), Expect = 2e-23
Identities = 324/494 (66%), Gaps = 3/494 (1%)
Strand=Plus/Plus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
|||||||| |||| |||||||| | ||| | |||||| |||||| |||||||| ||
Sbjct 1925 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 1984
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722
| |||||| | ||| || || || || ||||| | || ||||| | ||
Sbjct 1985 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 2044
Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782
| ||| | | | || || |||| || || ||||| || || | ||| |||||
Sbjct 2045 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2104
Query 131783 ATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839
| ||| || ||||| || ||||| | || | | | | |||| ||| | ||
Sbjct 2105 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 2164
Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899
|| | ||| || | | ||||||| ||| || ||||| | ||||| ||| ||
Sbjct 2165 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 2224
Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959
|| | |||| |||||| |||||| ||||||||||| | | ||||||||| | || |||
Sbjct 2225 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 2284
Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAA 132019
| | || || | ||| ||||| || | || ||| | || || | | |||||
Sbjct 2285 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 2344
Query 132020 GAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAA 132079
|| || | |||| || ||| || || || || | ||| ||| ||||||||| ||
Sbjct 2345 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 2404
Query 132080 AGTTTTTTGGCCAT 132093
||| |||| |||
Sbjct 2405 TATTTGTTGGACAT 2418
>seq3136
Length=22676
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || |||||||| || ||||||||||||| | |||| | ||||||
Sbjct 19973 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 20032
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||| ||| | || | ||| ||||||||||| || | |||||| || || |
Sbjct 20033 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGG 20092
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | ||||| | | || || || ||||| || | |||
Sbjct 20093 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 20152
Query 27219 CCCGTCAGAGTTTTCAC 27235
|| || ||||| || ||
Sbjct 20153 CCAGTGAGAGTCTTGAC 20169
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || ||||| || || |||||||| | |||| | || ||
Sbjct 19745 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 19804
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || ||||| || | || ||||| || || ||||| || | |||||| ||||| |
Sbjct 19805 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 19864
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| ||||| | | || | || |||| | ||||| || | || || | ||
Sbjct 19865 ATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTT 19924
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||||||||||
Sbjct 19925 CCGGTAAGTGTCTTGACGAAGATTTGCATA 19954
Score = 82.4 bits (90), Expect = 6e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || |||||||| ||||||||||||| | | || | ||||| || ||||| ||
Sbjct 20265 GTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCT 20324
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | |||||||| ||||| || | ||||| ||||| |||||| | ||
Sbjct 20325 GCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTT 20384
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| | | || | || || ||| || || || || || || | ||||| ||
Sbjct 20385 ACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 20437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424912187749368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |