Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2512 179 4e-40 >seq2512 Length=7492 Score = 179 bits (198), Expect = 4e-40 Identities = 498/758 (66%), Gaps = 12/758 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| ||||||||||| | | | | | |||||| ||| Sbjct 2483 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 2424 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | || ||||| || |||||| | || || || ||| ||||||||| Sbjct 2423 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 2364 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | || |||||||| | | |||||||| || || || || | Sbjct 2363 CACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTA 2304 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || || || |||||| ||||| ||||| || | || ||||| ||| || Sbjct 2303 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 2244 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || ||||| | || | Sbjct 2243 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 2186 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || ||||| || || ||||| ||||| || | |||||| |||| ||||| Sbjct 2185 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 2126 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || || |||| || ||||| |||||||| || || | || Sbjct 2125 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 2066 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| || || || || ||| || || | ||||| | ||| |||||| || || Sbjct 2065 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 2006 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || ||||||||||||| ||||||||| | || || ||| ||| ||| ||| || Sbjct 2005 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 1946 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| || || || || || | | ||| || || || |||||| | | | Sbjct 1945 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCT 1886 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846 ||| || || | || | || | || | | |||| |||| || | || Sbjct 1885 CTATGAGAGTTATG-AG---AAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGC 1830 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | | || ||| || || ||||| |||| || | |||| ||||||| Sbjct 1829 TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCATGCTTTACAAGG 1770 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || | |||| ||||||||||||| |||||| ||||| Sbjct 1769 ATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGC 1732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785 |||||| ||||| ||| || ||||||||| | || ||| | | || || | ||| Sbjct 965 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAAT-TG-TTCAAATGGC 908 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||||||||||| | | |||||||| || || ||||||| |||| | | || Sbjct 907 CGCTGATCGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCC 848 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| |||| | | || ||||| || ||| ||||| ||| |||||||| || Sbjct 847 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 788 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 787 AATGTACTACCTCCGTACC 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186662382200