Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 176 5e-39
seq34 170 2e-37
seq2512 150 2e-31
seq662 143 3e-29
>seq3136
Length=22676
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || || | |||||||||||
Sbjct 19953 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 19894
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || |||| | || || || || |||||||| || || || ||||||
Sbjct 19893 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 19834
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| ||
Sbjct 19833 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 19774
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || ||| | ||| | ||||| || |||||
Sbjct 19773 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 19727
Score = 161 bits (178), Expect = 1e-34
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| || | ||| |
Sbjct 20169 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 20110
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| |||||||| || || || ||| | ||
Sbjct 20109 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 20050
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|| |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| ||
Sbjct 20049 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 19991
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| ||||| | || | || ||||| |||||
Sbjct 19990 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 19955
Score = 136 bits (150), Expect = 5e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| | |||| ||| | || | |||
Sbjct 20437 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 20378
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||||||||| || ||||| ||||| | || || || || ||
Sbjct 20377 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 20318
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| ||
Sbjct 20317 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 20259
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 20258 TCTCGTCCTCCGTCTTCGTGGCGG 20235
Score = 113 bits (124), Expect = 5e-20
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||| ||||| | || || || ||
Sbjct 19725 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 19666
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||| ||||||||||| || || || |||||
Sbjct 19665 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 19606
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || |||||||| ||||| | ||||||| | || || | || || ||
Sbjct 19605 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 19546
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| || ||||| |||| | || | || | |||||||| || || ||| || | |
Sbjct 19545 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 19489
Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674
|| | |||||||||| ||| ||| |||
Sbjct 19488 CTTATCTTCTGCACATATCTTATGCGGCGTTC 19457
>seq34
Length=19952
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || || || || || || || || |||||||| || |
Sbjct 14017 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 14076
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || ||||||||||||||||| || || || |||
Sbjct 14077 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 14136
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || || || ||||||||||| |||| || ||||| | ||||| ||
Sbjct 14137 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 14196
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||||||||||||||| | ||| | ||||| || |||||
Sbjct 14197 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 14243
>seq2512
Length=7492
Score = 150 bits (166), Expect = 2e-31
Identities = 525/811 (65%), Gaps = 19/811 (2%)
Strand=Plus/Plus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||||| ||||| ||||||||||| || ||| || || ||||| || ||||| |
Sbjct 1694 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTC 1753
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| |||||| || |||||||| |||| | || | |||||||| || | || |
Sbjct 1754 TTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCG 1813
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
|| |||| || ||||| || | || |||| |||||| | | ||||| | ||
Sbjct 1814 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 1873
Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186
|| | | || |||||| |||| | | || | | |||| | | || ||
Sbjct 1874 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 1930
Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246
|| || |||||||| || ||| || | || || || ||| ||||||||| ||
Sbjct 1931 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 1990
Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
|| ||||| | ||| ||| || || ||| ||| | || || | || |||||
Sbjct 1991 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTT 2050
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | || || || || | | || || ||||| ||||| ||||| || || | |
Sbjct 2051 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 2110
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| || | ||||| |||| |||||| | ||||| || || || || | |
Sbjct 2111 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGC 2170
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
|| || | ||| || | || | |||||| ||||| |||| | || |||| ||
Sbjct 2171 ATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 2230
Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540
| || ||| || ||||| || || || | || ||| || ||| ||||||
Sbjct 2231 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 2287
Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600
|| | ||| |||||||| || || || ||||| | ||||| |||| | ||| || |
Sbjct 2288 TTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGAT 2347
Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
|| | ||| | ||| | | | || || ||| ||||| |||| ||||| |||| |
Sbjct 2348 GAAAGCTGTG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 2405
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| ||| ||||| |||| ||||| || || ||| |||||||||||||||||||
Sbjct 2406 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATAC 2465
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749
| | || |||||||| | ||| | ||| ||
Sbjct 2466 CAACGGCAACACGCATGATCATTTGCTGTGG 2496
>seq662
Length=26719
Score = 143 bits (158), Expect = 3e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 18023 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 17964
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| |
Sbjct 17963 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 17904
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||||||||| | || ||||| ||||||| || | |||||
Sbjct 17903 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 17844
Query 27594 GG 27595
||
Sbjct 17843 GG 17842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570279824233680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |