Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 129 4e-25
seq662 105 4e-18
seq34 95.1 8e-15
>seq3136
Length=22676
Score = 129 bits (142), Expect = 4e-25
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | |||||| || | |||||||||||| |||||||| ||||| |||
Sbjct 19499 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 19558
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| | || || | || || || ||||| || || |||||||||||||| ||
Sbjct 19559 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 19618
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657
| |||||||||||| ||| |||| || || | ||| || ||| || | ||||
Sbjct 19619 ATACCCTCCTTGTCT-TGAATCTTTGACTTGACATTGTCAATGGTATCTGACGAT-TCCA 19676
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || || || || || || || || || || ||||||||
Sbjct 19677 CTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 19725
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | ||||||||| ||||||||||||||| || ||
Sbjct 20235 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 20294
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | |||||||||||||| || || || || || |||||||||||||| ||
Sbjct 20295 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 20354
Query 34600 ACTCCCTCCTTGTC 34613
| ||||||||| ||
Sbjct 20355 ATTCCCTCCTTATC 20368
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | |||||| || || ||| || ||||| ||||| || ||
Sbjct 19955 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 20014
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| ||||||||||| || || || ||||| ||||| ||||| ||
Sbjct 20015 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 20074
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 20075 ATACCCTCCTTGTCCTGGATCTT 20097
>seq662
Length=26719
Score = 105 bits (116), Expect = 4e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||||||||| || |||||||| ||||| |||| || ||||| || ||||| || |
Sbjct 17842 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 17901
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| ||||||||||| || | |||||||||||| ||||||
Sbjct 17902 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 17947
>seq34
Length=19952
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||| | ||||| || |||||| |||||||| ||||| || || |
Sbjct 14245 CGCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGG 14186
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|||| || || | ||||| ||||| || ||||| || || | ||| || || || || |
Sbjct 14185 AAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTG 14126
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | |||||||||||| |||| || | || || | || || || | ||
Sbjct 14125 GGATTCCCTCCTTGTCCTGGATC-TTGGACTTGACATTGTCGATGGTATCAGAGGATTCA 14067
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || | ||| || |||||||| || | ||||| || || |||||||||
Sbjct 14066 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 14016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314713148395337
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |