Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq34 197 3e-45
seq3136 163 7e-35
seq662 138 3e-27
seq2512 107 4e-18
seq390 100 7e-16
>seq34
Length=19952
Score = 197 bits (218), Expect = 3e-45
Identities = 171/212 (81%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||||||||| || ||||||||||| || || | |||||| | |||||||
Sbjct 14228 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 14169
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || ||||| || ||||| || | ||| |||||||||
Sbjct 14168 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 14109
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| |||||| |||||||||||| ||||| ||
Sbjct 14108 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 14049
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || || || || | ||||||
Sbjct 14048 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 14017
>seq3136
Length=22676
Score = 163 bits (180), Expect = 7e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| ||||| |||||||||||||| || || |||||
Sbjct 19960 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 20019
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || || || || |||||||| | |||||||| || ||||||| ||
Sbjct 20020 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 20079
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| || || ||||| ||
Sbjct 20080 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAG 20139
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 20140 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 20169
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || || ||||||||||| |||||||| || || | || || | |||||
Sbjct 19742 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 19801
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || |||||||| ||||| ||||| || || | || ||||| ||
Sbjct 19802 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 19861
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| ||||||||| |||||||| || || |||||||| | ||||| |||
Sbjct 19862 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 19921
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 19922 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953
Score = 143 bits (158), Expect = 6e-29
Identities = 154/201 (77%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || ||||| ||||| ||||| ||||| || || | |||||
Sbjct 20240 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGG- 20298
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | |||||||| || || |||||||||||||| | ||| |||||||| || |||| ||
Sbjct 20299 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 20358
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||| ||||| || ||||| |||||||| || | || |||||||
Sbjct 20359 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGA 20418
Query 211072 GAGTGATCGTCTTTCCCGTGA 211092
| ||||| ||||| || ||||
Sbjct 20419 GGGTGATGGTCTTGCCGGTGA 20439
>seq662
Length=26719
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||| ||||| || || | |||||| | ||| || || || ||||| || ||||||||
Sbjct 17844 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17903
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| ||| ||||||||||||||||| || || || ||
Sbjct 17904 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17963
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || |||||| || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 17964 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 18022
>seq2512
Length=7492
Score = 107 bits (118), Expect = 4e-18
Identities = 191/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||||||||||||||| || ||||| ||||| ||||| || ||||
Sbjct 1738 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 1797
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||||| ||||||| |||||||| | |||||||| |||||| || ||||| |
Sbjct 1798 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACC 1857
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
| | ||||| ||||| || | | ||||| | || || || ||||| |||||| |
Sbjct 1858 TCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGC 1917
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTT--CACTCGT 178330
| || ||| ||||||||||| | || |||| | ||| ||| || || ||
Sbjct 1918 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGC 1975
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
||||||||||| || | |||| | |||||||||||
Sbjct 1976 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 2012
>seq390
Length=36788
Score = 100 bits (110), Expect = 7e-16
Identities = 129/175 (74%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
|| ||||||||||| | || || |||||||| ||||||||| | | ||||| |||||
Sbjct 33627 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 33568
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926
||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| |
Sbjct 33567 AAGCGCCACAACTACGTCCGTAAGGTTGCTGAGCTGGCTGTTCAGAATTTCATCACCGCA 33508
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
|||| |||| ||| |||||||| ||||||| |||||||| || |||||||
Sbjct 33507 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTCAAGA 33456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159088301337485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |