Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 91.5 1e-13
>seq3136
Length=22676
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || ||| |||||| || || || || || | || || || | || |||
Sbjct 19745 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 19804
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|| || || || ||||| |||||||| |||||||| |||||| | | ||| || ||
Sbjct 19805 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG-ATACCCTCCTTATCTTG 19863
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || ||| | ||| | | | ||||| |||||| || |||| ||||| | |
Sbjct 19864 GATCTTTGATTTCA-CGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCT 19922
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || || || || || |||||||||||
Sbjct 19923 TTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429523146711857
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |