Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq34 113 1e-19 seq3136 107 4e-18 >seq34 Length=19952 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| || || |||||||||||||| |||| | || | |||||| Sbjct 14228 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 14169 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||| || | | |||||| ||||| || Sbjct 14168 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 14109 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || || || || || || || || ||| Sbjct 14108 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 14049 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||||| |||||| Sbjct 14048 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 14017 >seq3136 Length=22676 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || |||||||| ||||||||||| || | || ||| | ||||| Sbjct 19742 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 19801 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||||||| | ||| || ||||| ||| Sbjct 19802 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 19861 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||| || | || | | | ||||| ||| || || | || || || Sbjct 19862 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 19921 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| ||||| Sbjct 19922 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970 ||| || || ||||||||||| | | |||||| ||||| || | ||||| || || Sbjct 19534 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 19591 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| |||||| Sbjct 19592 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 19651 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 | || | | | ||||| || ||||| | ||||| || || || || | |||||| Sbjct 19652 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTG 19711 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 19712 ACGAAGATCTGCAT 19725 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||||||||| ||| | || | |||||||| | Sbjct 19975 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 20033 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | | || || |||| | || || ||||| || || | Sbjct 20034 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 20093 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| || ||| || |||||||| || || |||| Sbjct 20094 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGC 20153 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||||||||| |||| Sbjct 20154 CAGTGAGAGTCTTGACGA 20171 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| ||||| |||||||| ||| || || | ||||| Sbjct 20249 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 20308 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| || Sbjct 20309 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 20368 Query 152012 TTGAATTTT 152020 ||||| || Sbjct 20369 CTGAATCTT 20377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153757394301919