Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq34 113 1e-19
seq3136 107 4e-18
>seq34
Length=19952
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | |||||||| || || |||||||||||||| |||| | || | ||||||
Sbjct 14228 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 14169
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||| || | | |||||| ||||| ||
Sbjct 14168 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 14109
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | | || || || || || || || || |||
Sbjct 14108 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 14049
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| || || ||||||| ||||||
Sbjct 14048 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 14017
>seq3136
Length=22676
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| || || |||||||| ||||||||||| || | || ||| | |||||
Sbjct 19742 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 19801
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || |||||||| | |||||||||| | ||| || ||||| |||
Sbjct 19802 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 19861
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || ||| ||| || | || | | | ||||| ||| || || | || || ||
Sbjct 19862 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 19921
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| ||||||| |||||
Sbjct 19922 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953
Score = 102 bits (112), Expect = 2e-16
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970
||| || || ||||||||||| | | |||||| ||||| || | ||||| || ||
Sbjct 19534 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 19591
Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030
||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| ||||||
Sbjct 19592 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 19651
Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090
| || | | | ||||| || ||||| | ||||| || || || || | ||||||
Sbjct 19652 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTG 19711
Query 152091 ACGAAGACCTGCAT 152104
||||||| ||||||
Sbjct 19712 ACGAAGATCTGCAT 19725
Score = 102 bits (112), Expect = 2e-16
Identities = 142/198 (72%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || ||||||||||||||||| ||| | || | |||||||| |
Sbjct 19975 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 20033
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || |||||||| | | || || |||| | || || ||||| || || |
Sbjct 20034 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 20093
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| || ||| || |||||||| || || ||||
Sbjct 20094 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGC 20153
Query 152077 CCGTGAGAGTCTTCACGA 152094
| ||||||||||| ||||
Sbjct 20154 CAGTGAGAGTCTTGACGA 20171
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| ||||||||||| ||||| |||||||| ||| || || | |||||
Sbjct 20249 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 20308
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| ||
Sbjct 20309 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 20368
Query 152012 TTGAATTTT 152020
||||| ||
Sbjct 20369 CTGAATCTT 20377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153757394301919
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |