Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3144 347 1e-90 seq128 253 2e-62 seq1719 91.5 2e-13 seq1429 86.0 7e-12 seq4099 84.2 2e-11 seq1454 84.2 2e-11 >seq3144 Length=1582 Score = 347 bits (384), Expect = 1e-90 Identities = 243/275 (88%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||||| Sbjct 297 TCTCACTCTGTTGCCCAGGCTGGGGTGCAGTGGCGTGATTTCGGCTCACTACAACCTCCG 238 Query 8404 CCTCC---CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460 || || | |||| ||| ||| |||||| ||||||||| ||||||||||||||||||| Sbjct 237 CCGCCTCTCAAGTTCCAGCGATTTTCCTGCGTCAGCCTCCTGAGTAGCTGGGATTACAGG 178 Query 8461 CAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520 | |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 177 TGAGCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGT 118 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 ||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||| Sbjct 117 TGGTCAGGCTGGTCTCGAACTCCTGACCCC--GTGATCCACCTGCCTCAGCCTCCCAAAG 60 Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 ||||||| |||||||||||||||||||| || ||| Sbjct 59 TGCTGGGGTTACAGGCATGAGCCACCGCACCCGGC 25 >seq128 Length=12833 Score = 253 bits (280), Expect = 2e-62 Identities = 175/197 (89%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 8421 ATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGC 8480 ||||||| |||||||||||| |||||||||||||||||||| |||| || ||| || Sbjct 5 ATTCTCC-GCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCATCATGCCCGGC 63 Query 8481 TAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 8540 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 64 TAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 123 Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGA 8600 ||||||||||| ||||||||||| ||| |||||||||||||| |||||||| |||| ||| Sbjct 124 TCCTGACCTCAAGTGATCCACCTACCTTGGCCTCCCAAAGTGGTGGGATTATAGGCGTGA 183 Query 8601 GCCACCGCGCCTGGCCC 8617 ||| | ||| |||||| Sbjct 184 GCCCCTGCGGGTGGCCC 200 >seq1719 Length=11692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 ||||| || | |||| |||||| || |||||| || |||| |||||||||| |||| Sbjct 11690 GCTCATTGTAGCCTCGACCTCCCAGGCTCAAGCGATCCTCCCAACTCAGCCTCCCAAGTA 11631 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTT 8496 ||||||| |||||||| ||||||| ||| |||||| ||| | ||||| Sbjct 11630 GCTGGGACTACAGGCACGTGCCACCATGCCTGGCTAATGTTTTTTTTTTT 11581 >seq1429 Length=3368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 8548 CTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCG 8607 |||| | ||||||||||||| |||||||||||||||||||||| ||| ||||||||| Sbjct 3368 CTCAAGCAATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCT 3309 Query 8608 CGCCTGGCCC 8617 ||||||||| Sbjct 3308 TGCCTGGCCC 3299 >seq4099 Length=2402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 8520 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAA 8579 ||| |||||||||||| ||| |||| | |||| |||| || | |||| |||||||||| Sbjct 2402 TTGCCCAGGCTGGTCTTGAATTCCT-AGCTCAAGTGANCCTCTCNCCTCAGCCTCCCAAA 2344 Query 8580 GTGCTGGGATTACAGGCATGAGCCACCGCGCCTG 8613 ||||||||||||||| || ||| || | ||||| Sbjct 2343 GTGCTGGGATTACAGCCA-CAGCTACTGTGCCTG 2311 >seq1454 Length=5831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||| || ||| |||||||||||||||||| |||||| ||||||| ||| |||| Sbjct 5755 TCTCGCTCAGTCGCCTAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTCCAAGTTCCG 5814 Query 8404 CCTCCCGGGTTCAAGC 8419 |||||| |||||| || Sbjct 5815 CCTCCCAGGTTCACGC 5830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521460041724600