Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3144 347 1e-90
seq128 253 2e-62
seq1719 91.5 2e-13
seq1429 86.0 7e-12
seq4099 84.2 2e-11
seq1454 84.2 2e-11
>seq3144
Length=1582
Score = 347 bits (384), Expect = 1e-90
Identities = 243/275 (88%), Gaps = 5/275 (2%)
Strand=Plus/Minus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
||||||||||||||||||||||| |||||||||| |||| || ||||||| |||||||||
Sbjct 297 TCTCACTCTGTTGCCCAGGCTGGGGTGCAGTGGCGTGATTTCGGCTCACTACAACCTCCG 238
Query 8404 CCTCC---CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460
|| || | |||| ||| ||| |||||| ||||||||| |||||||||||||||||||
Sbjct 237 CCGCCTCTCAAGTTCCAGCGATTTTCCTGCGTCAGCCTCCTGAGTAGCTGGGATTACAGG 178
Query 8461 CAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520
| |||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 177 TGAGCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGT 118
Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580
||| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 117 TGGTCAGGCTGGTCTCGAACTCCTGACCCC--GTGATCCACCTGCCTCAGCCTCCCAAAG 60
Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615
||||||| |||||||||||||||||||| || |||
Sbjct 59 TGCTGGGGTTACAGGCATGAGCCACCGCACCCGGC 25
>seq128
Length=12833
Score = 253 bits (280), Expect = 2e-62
Identities = 175/197 (89%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 8421 ATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGC 8480
||||||| |||||||||||| |||||||||||||||||||| |||| || ||| ||
Sbjct 5 ATTCTCC-GCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCATCATGCCCGGC 63
Query 8481 TAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 8540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 64 TAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 123
Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGA 8600
||||||||||| ||||||||||| ||| |||||||||||||| |||||||| |||| |||
Sbjct 124 TCCTGACCTCAAGTGATCCACCTACCTTGGCCTCCCAAAGTGGTGGGATTATAGGCGTGA 183
Query 8601 GCCACCGCGCCTGGCCC 8617
||| | ||| ||||||
Sbjct 184 GCCCCTGCGGGTGGCCC 200
>seq1719
Length=11692
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446
||||| || | |||| |||||| || |||||| || |||| |||||||||| ||||
Sbjct 11690 GCTCATTGTAGCCTCGACCTCCCAGGCTCAAGCGATCCTCCCAACTCAGCCTCCCAAGTA 11631
Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTT 8496
||||||| |||||||| ||||||| ||| |||||| ||| | |||||
Sbjct 11630 GCTGGGACTACAGGCACGTGCCACCATGCCTGGCTAATGTTTTTTTTTTT 11581
>seq1429
Length=3368
Score = 86.0 bits (94), Expect = 7e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 8548 CTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCG 8607
|||| | ||||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 3368 CTCAAGCAATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCT 3309
Query 8608 CGCCTGGCCC 8617
|||||||||
Sbjct 3308 TGCCTGGCCC 3299
>seq4099
Length=2402
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 8520 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAA 8579
||| |||||||||||| ||| |||| | |||| |||| || | |||| ||||||||||
Sbjct 2402 TTGCCCAGGCTGGTCTTGAATTCCT-AGCTCAAGTGANCCTCTCNCCTCAGCCTCCCAAA 2344
Query 8580 GTGCTGGGATTACAGGCATGAGCCACCGCGCCTG 8613
||||||||||||||| || ||| || | |||||
Sbjct 2343 GTGCTGGGATTACAGCCA-CAGCTACTGTGCCTG 2311
>seq1454
Length=5831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| ||| || ||| |||||||||||||||||| |||||| ||||||| ||| ||||
Sbjct 5755 TCTCGCTCAGTCGCCTAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTCCAAGTTCCG 5814
Query 8404 CCTCCCGGGTTCAAGC 8419
|||||| |||||| ||
Sbjct 5815 CCTCCCAGGTTCACGC 5830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521460041724600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |