Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 165 1e-35 seq27 105 8e-18 >seq20 Length=946066 Score = 165 bits (182), Expect = 1e-35 Identities = 764/1191 (64%), Gaps = 36/1191 (3%) Strand=Plus/Plus Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 ||| || | ||| || || || || || || ||||||| | | | | ||| | || || Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||||||| || ||| || |||||| || | || | || || ||||| |||| Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || |||||||| || || ||||| || ||||||||||| |||| | || | ||| || Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 53881 TTTCCAGA-----CGA-CACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA 53934 | ||||| || ||||| | | | | | | | || | ||||| Sbjct 121342 ATACCAGAGCTTCTGAGCACGAAC----AGTCTCG--CGGCCACGGCCCTCGCGCTCGTA 121395 Query 53935 TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 53994 | || | ||||||||| || || | || | | | ||||| || | Sbjct 121396 ACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTT 121455 Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054 || || | ||| | ||| || |||| |||| || || ||||| || ||||| || || Sbjct 121456 GGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGAT 121515 Query 54055 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 54113 ||| || || ||| || ||||| | || | | ||| || || || |||||| | Sbjct 121516 CCAGAGGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCA 121574 Query 54114 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAG 54173 | || ||||| | | | ||||| |||||| || || | ||| |||| | | || | Sbjct 121575 GGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCG 121634 Query 54174 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 54233 | || ||||| || |||||||| | || | ||| ||||| || ||||| | | ||| | Sbjct 121635 GGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAG 121694 Query 54234 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 54291 |||| | ||| || || | |||||| || || ||| || ||| ||||||| || Sbjct 121695 GAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGC 121754 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 | | |||| ||||| || || || || | || ||||| | ||| || || |||| Sbjct 121755 GATGCACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACA-GGTCTTAA 121811 Query 54352 -CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 || || || || ||||| || || || ||| |||||| || || || || |||| Sbjct 121812 GTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACA 121871 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 | || | | || || || || || | || || |||||||| || || | || | Sbjct 121872 TCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCT 121931 Query 54471 CAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 || | |||| | ||| || || || || || || || | ||| || ||||| Sbjct 121932 GGGACATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACG 121990 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 || |||||||| | ||| || || |||| ||| | | |||| ||| || || | | Sbjct 121991 GCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGG 122050 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAA 54647 || || ||| | || || |||||||| | | ||| ||||| || || ||||| | Sbjct 122051 TATGAACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGA 122108 Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA---ATACT-T 54703 ||| | |||||||| | ||| | | | || ||| | ||| ||| | Sbjct 122109 CAATGGCAGAGTTGAGCTCATCTGCGTGTGCCTGGAC--AATC--TTGTAGACTGACTCT 122164 Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 || || || || | || || || || || || |||||||| || | | ||| || Sbjct 122165 GAGATCATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATG 122224 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || | || || || | ||||| || || || ||||| || | ||||| Sbjct 122225 ACAGCAGAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCC 122284 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 54873 |||||||| || || ||||| |||| | || || |||||| | ||||| Sbjct 122285 AGAATGGCGTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGC 122334 >seq27 Length=812739 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || |||||||| | ||||| || | | || | |||||||| || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||| || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283 ||| || || || || || || ||||||| ||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719462602240