Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21]
288 sequences; 32,067,383 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq27 197 1e-45
seq82 107 2e-18
seq52 89.7 5e-13
seq59 86.0 6e-12
>seq27
Length=812739
Score = 197 bits (218), Expect = 1e-45
Identities = 323/456 (71%), Gaps = 7/456 (2%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGC-GC 117040
|||||||||| ||||| ||||| |||||| | | || ||| || ||| || | | ||
Sbjct 400916 AGAAGGCCGACTGGGCTCTGCGATGGATCACAGACA-AGAACTCGACTTTTGCCACCCGC 400858
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| || |||||||| || |||||||| ||||||| ||| || || |||| |||
Sbjct 400857 CTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTT 400798
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || ||||| |||||||| ||||| ||| ||||||||||||||| |
Sbjct 400797 TGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 400738
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|| ||||| |||| ||||||||||| || ||||| ||| | | | || ||
Sbjct 400737 GATGAGGGCATGCACTGCGACTTTGCTTGCTTGCTCTTCTCACTCCTCAACAACCGCCCC 400678
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| || ||||| || ||| |||| || || || | ||||||||| |||||
Sbjct 400677 AGCAAGGATGCCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTT 400618
Query 117281 ACCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338
||||| || | | || |||| ||||||||| | || || || | |||| || ||||
Sbjct 400617 ACCGAGGCTCTTCCCTGTGC-TCTGCTGGGCATGAA-CGCCAACCTCATGTGCCAGTACA 400560
Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398
| ||||| ||||| ||| | ||||| | | || | | | ||||| |||||| |
Sbjct 400559 TTGAGTTTGTCGCTGACCGTCTGCTCTTGGCTCTTGGCAACACCAAGGTATACAACTCCA 400500
Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433
| ||||| | ||||| ||| | |||||| ||||
Sbjct 400499 CAAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 400464
Score = 181 bits (200), Expect = 1e-40
Identities = 206/273 (75%), Gaps = 5/273 (2%)
Strand=Plus/Minus
Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707
||||| |||||||| || || |||||||||| || ||| | || || ||||||||
Sbjct 401302 TACAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTT 401243
Query 116708 AGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764
||||||| | |||| |||| || |||||||| |||||| ||||| || ||
Sbjct 401242 CACGACTGGAACAAGCGCCTGAATGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCT 401183
Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GA 116823
|| ||||| ||| ||| ||||| ||||||||||| || |||||||| ||| | ||| ||
Sbjct 401182 TTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTC-CAGCGA 401124
Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883
||| || | |||| || || |||||||||||||| |||||| ||||||||| | ||
Sbjct 401123 GGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCA 401064
Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
|||||||| || || |||||||||||| ||
Sbjct 401063 CTCGGAAACCTACTCTCTCCTCATCGACACCTA 401031
>seq82
Length=92890
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| || || ||| | || || ||| | |
Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| ||||| || || || || | |||||
Sbjct 13116 GACACAATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 13058
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| ||||| ||||| || || | ||||| ||| |||||||||
Sbjct 13057 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 12998
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| || | || || ||| | || | ||| || | || ||
Sbjct 12997 CATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGG 12950
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| |||||||| |||| |||||| || | || | | | | |||| |||||
Sbjct 13380 ACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACG-TCAAGTC 13322
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | || || || ||||| || | ||||||||||| | |||| ||| || ||
Sbjct 13321 GAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAAA 13262
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| || ||||| ||||||||||||||||||||| | || || ||
Sbjct 13261 GCAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTCA 13202
Query 40893 TCTAGTGTTGCG 40904
|| || ||||
Sbjct 13201 CCTTGTCCTGCG 13190
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| |||| || || | | || | | | | | |||||
Sbjct 13672 TCACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATGTCAAGA 13613
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | || || ||||||||||| | |||||||| || | |||| ||| || |
Sbjct 13612 GCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGAA 13553
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || || | |||||| | ||||||||||||||| ||||| |||| || |
Sbjct 13552 AGCAGCTCGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTCTCC 13493
Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916
| || ||| | ||| || | || ||
Sbjct 13492 ACCTTGTGCTTCGCCTGCGCGGTGG 13468
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || |||||||| | || || || | | |
Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | || || ||||| ||||| | ||||||
Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || || ||| |||| |||| || || || ||||||||||
Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||| ||| |||| ||||
Sbjct 12768 ATTCAGAAAGAGTCCACATTGCA 12746
>seq52
Length=336907
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| |||||||| ||| |||| || || || || |||| || |||||
Sbjct 188503 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTTGCTGGCAAG 188444
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || || | ||||| || |||||||||||||||||||||| | || || ||
Sbjct 188443 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCA 188385
>seq59
Length=254989
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| | ||||| || || ||||||| ||| ||||| ||| ||||
Sbjct 239741 GACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAG 239682
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | || || || || |||||||||||||||||| |||| || ||
Sbjct 239681 GATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCA 239632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217345210880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |