Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27 197 1e-45 seq82 107 2e-18 seq52 89.7 5e-13 seq59 86.0 6e-12 >seq27 Length=812739 Score = 197 bits (218), Expect = 1e-45 Identities = 323/456 (71%), Gaps = 7/456 (2%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGC-GC 117040 |||||||||| ||||| ||||| |||||| | | || ||| || ||| || | | || Sbjct 400916 AGAAGGCCGACTGGGCTCTGCGATGGATCACAGACA-AGAACTCGACTTTTGCCACCCGC 400858 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || |||||||| || |||||||| ||||||| ||| || || |||| ||| Sbjct 400857 CTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTT 400798 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || ||||| |||||||| ||||| ||| ||||||||||||||| | Sbjct 400797 TGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 400738 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || ||||| |||| ||||||||||| || ||||| ||| | | | || || Sbjct 400737 GATGAGGGCATGCACTGCGACTTTGCTTGCTTGCTCTTCTCACTCCTCAACAACCGCCCC 400678 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| || ||||| || ||| |||| || || || | ||||||||| ||||| Sbjct 400677 AGCAAGGATGCCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTT 400618 Query 117281 ACCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || | | || |||| ||||||||| | || || || | |||| || |||| Sbjct 400617 ACCGAGGCTCTTCCCTGTGC-TCTGCTGGGCATGAA-CGCCAACCTCATGTGCCAGTACA 400560 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 | ||||| ||||| ||| | ||||| | | || | | | ||||| |||||| | Sbjct 400559 TTGAGTTTGTCGCTGACCGTCTGCTCTTGGCTCTTGGCAACACCAAGGTATACAACTCCA 400500 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 | ||||| | ||||| ||| | |||||| |||| Sbjct 400499 CAAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 400464 Score = 181 bits (200), Expect = 1e-40 Identities = 206/273 (75%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| |||||||| || || |||||||||| || ||| | || || |||||||| Sbjct 401302 TACAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTT 401243 Query 116708 AGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 ||||||| | |||| |||| || |||||||| |||||| ||||| || || Sbjct 401242 CACGACTGGAACAAGCGCCTGAATGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCT 401183 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GA 116823 || ||||| ||| ||| ||||| ||||||||||| || |||||||| ||| | ||| || Sbjct 401182 TTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTC-CAGCGA 401124 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 ||| || | |||| || || |||||||||||||| |||||| ||||||||| | || Sbjct 401123 GGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCA 401064 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||||| || || |||||||||||| || Sbjct 401063 CTCGGAAACCTACTCTCTCCTCATCGACACCTA 401031 >seq82 Length=92890 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || || ||| | || || ||| | | Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || || || || | ||||| Sbjct 13116 GACACAATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 13058 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 13057 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 12998 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || | || || ||| | || | ||| || | || || Sbjct 12997 CATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGG 12950 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| |||| |||||| || | || | | | | |||| ||||| Sbjct 13380 ACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACG-TCAAGTC 13322 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || || ||||| || | ||||||||||| | |||| ||| || || Sbjct 13321 GAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAAA 13262 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||||| ||||||||||||||||||||| | || || || Sbjct 13261 GCAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTCA 13202 Query 40893 TCTAGTGTTGCG 40904 || || |||| Sbjct 13201 CCTTGTCCTGCG 13190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || | | || | | | | | ||||| Sbjct 13672 TCACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATGTCAAGA 13613 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | || || ||||||||||| | |||||||| || | |||| ||| || | Sbjct 13612 GCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGAA 13553 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | |||||| | ||||||||||||||| ||||| |||| || | Sbjct 13552 AGCAGCTCGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTCTCC 13493 Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || ||| | ||| || | || || Sbjct 13492 ACCTTGTGCTTCGCCTGCGCGGTGG 13468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || | | | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | || || ||||| ||||| | |||||| Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||| |||| |||| || || || |||||||||| Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||| |||| |||| Sbjct 12768 ATTCAGAAAGAGTCCACATTGCA 12746 >seq52 Length=336907 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| ||| |||| || || || || |||| || ||||| Sbjct 188503 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTTGCTGGCAAG 188444 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||| || |||||||||||||||||||||| | || || || Sbjct 188443 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCA 188385 >seq59 Length=254989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | ||||| || || ||||||| ||| ||||| ||| |||| Sbjct 239741 GACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAG 239682 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | || || || || |||||||||||||||||| |||| || || Sbjct 239681 GATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCA 239632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217345210880