Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq82 129 5e-25 seq52 105 6e-18 seq59 91.5 1e-13 >seq82 Length=92890 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || ||||| || |||||||| ||| | |||||| ||| || Sbjct 12968 ACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 13027 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| ||||||||||||| || || ||||| || || ||||||||| | Sbjct 13028 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 13087 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| || | || ||||| | ||| | || || Sbjct 13088 ATCTTGGACTTGACGTTGTCGATTGTGTCCGATGAT-TCCACCTCCAGGGTAATTGTCTT 13146 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || || ||||| ||||| Sbjct 13147 GCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||| | ||||| || || || ||||| |||||||| ||| Sbjct 13466 TACCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGG 13525 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||| |||||||| ||||| ||| |||| | |||||||| || |||| Sbjct 13526 ACAAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAG 13585 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || || || || || | |||| ||| |||| ||| | Sbjct 13586 GGATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTA 13645 Query 118690 CCTCGACGGTCACCGTTTTGCCGGT 118714 |||||| ||| | || |||||||| Sbjct 13646 CCTCGAGGGTGATGGTCTTGCCGGT 13670 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| |||||||| ||||||||||| ||| | || || ||||| Sbjct 12740 ACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCC 12799 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || |||||| ||||||| |||||||| || ||||| || |||||||| || Sbjct 12800 AACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 12859 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||| || || | || | || || Sbjct 12860 ATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTT 12919 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 12920 CCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 >seq52 Length=336907 Score = 105 bits (116), Expect = 6e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| || |||||| ||||||| Sbjct 188379 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 188438 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || ||||| |||| || ||||| ||||| || || |||||||||||||| Sbjct 188439 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTC 188494 >seq59 Length=254989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||||||||| | ||| || |||||| Sbjct 239626 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCC 239685 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| ||||||| ||||| || || || || |||||||||||||||||| Sbjct 239686 AACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCTGTA 239745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828877255296