Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq82 127 2e-24 >seq82 Length=92890 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| ||||| || | | ||| | ||||| ||||||||| ||| || ||||| |||| Sbjct 12714 CCTACTGTCCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGT 12773 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || | || || || |||| || | ||||||||||||||| ||||| |||||||||| Sbjct 12774 AGTCGGAAAGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGT 12833 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 | | || | | |||||| ||| ||| || || | | | | |||||||||| Sbjct 12834 CAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCG 12893 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 12894 ACTCAACTTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815541456640