Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq82 132 3e-26 seq59 82.4 5e-11 >seq82 Length=92890 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | || |||| ||| || || |||||||| |||||||||||||| Sbjct 12721 TCCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGA 12780 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 12781 AAGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGG 12840 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||| ||||| || | | || | ||| |||| || || Sbjct 12841 GATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAAC 12900 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || || || ||||||||||| Sbjct 12901 TTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| ||||| | ||| ||| || || ||||||||||||||| Sbjct 13468 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 13527 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || || | || || | |||||| || ||||| || | ||||||||||| || Sbjct 13528 AAGGTG-CGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGG 13586 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||| | || | | || | ||| | || || || Sbjct 13587 GATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTAC 13646 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 13647 CTCGAGGGTGATGGTCTTGCCGGTGA 13672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | ||| || ||||| ||||||||||| ||| Sbjct 13178 CCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 13237 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || ||||| || | || |||||||| || Sbjct 13238 AGGGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGA 13297 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | | || | ||| | |||||||| Sbjct 13298 ATGCCTTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACT 13357 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 13358 TCGAGTGTGATGGTCTTGCCGGT 13380 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||||||||| || ||| | || || | ||||||||| ||||| Sbjct 12985 TTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 13044 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||| ||||| || | | |||||||| ||||| ||| | | Sbjct 13045 GATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTT 13104 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||||| || |||| || || || ||||| || ||||| || || Sbjct 13105 GTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGAC 13164 Query 34378 AAAGATCTGCAT 34389 || || ||||| Sbjct 13165 GAAAATTTGCAT 13176 >seq59 Length=254989 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || |||| | || |||||||||||||| ||||| Sbjct 239644 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCCAACTGCTTGCCGGCGAAG 239703 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| ||||| ||||| ||| | || ||||||||| Sbjct 239704 ATGAGGCGCTGTTGGTCAGGGGGAATGCCCTCCTTGTC 239741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070866017280