Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 235 5e-57 seq82 129 5e-25 seq27 113 4e-20 >seq20 Length=946066 Score = 235 bits (260), Expect = 5e-57 Identities = 635/963 (66%), Gaps = 14/963 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 |||| |||||||| ||||| || || ||||| || | || ||||| | ||| || Sbjct 121166 GCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCA 121225 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || || || || || || | || |||||||||| || | ||||| Sbjct 121226 GTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAG 121285 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| |||||| | || | || || || ||| | ||||| || || | Sbjct 121286 GCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATAC 121345 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTA 23259 || | ||||||| ||||| ||| | || | | ||| || |||||| ||||| Sbjct 121346 CAGAGCTTCTGAGCACGAACA-GTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATGGTA 121404 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | | | ||||| || | || || ||| || ||||| || | | | || || | Sbjct 121405 GAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAA 121464 Query 23320 GAGACTCCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 | |||| || | || | | || || |||| |||||||| || ||||| || Sbjct 121465 CAATGTCCA--TTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGG 121522 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 || ||||| || |||||||| || || || || |||||| ||||| || || | Sbjct 121523 GCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGG 121582 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || | || || || |||||||| ||||||||||| | |||||| || ||||| | ||| Sbjct 121583 AAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTG 121642 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| ||||||||||| ||||| || ||||||||||| || | ||||| || | |||| Sbjct 121643 TTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGA 121702 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| || | || ||| | | || || | || || | | || || Sbjct 121703 CCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACA 121762 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | || ||| || || || | | || || || | || || || || |||||||| Sbjct 121763 TTGAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAA 121822 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 || ||||| |||||||| || || | | | | ||| || || ||||| || | Sbjct 121823 ATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAA 121882 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAG 23796 || || | || ||| ||||| ||| ||||| || ||||| | ||||| ||| Sbjct 121883 GGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAG 121942 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 | ||| || || || || |||||||| ||||| ||||| || | ||| || ||||| Sbjct 121943 -TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCAT 122001 Query 23857 CATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 || ||| | ||| |||| || | ||| | |||||| || || || |||||||| Sbjct 122002 CAGCATATGTTGTGGTCGCTCAGCAACCTT---GCCGTTGATGCGGAGGAGGTATGAACG 122058 Query 23914 TTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || | || || || ||||| | | ||||| || || || |||| || ||||| || Sbjct 122059 TTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAATCGCGGTCGTAGACAATGGCAGA 122118 Query 23974 ATT 23976 || Sbjct 122119 GTT 122121 >seq82 Length=92890 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||||||||| ||||| || || ||| | || || ||| | || Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||| | || || ||||| Sbjct 13116 GACACAATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 13057 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | ||||| ||| | ||| || ||| Sbjct 13056 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 12997 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| || ||| ||||||| | ||| | || |||| Sbjct 12996 ATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGGTA 12948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || ||||| | || ||||| || | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||| || | || || |||||| Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 ||||| || || |||||||| || |||||||| ||| | | ||| | ||| || | Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTT--CCGACTACA 12771 Query 31371 ACATTCAAAAAGAATCGAC 31389 ||||||| ||||| || || Sbjct 12770 ACATTCAGAAAGAGTCCAC 12752 >seq27 Length=812739 Score = 113 bits (124), Expect = 4e-20 Identities = 283/424 (67%), Gaps = 22/424 (5%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || ||||| ||||| ||||| ||| |||||| | || |||||| | Sbjct 400851 GCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTC 400792 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || |||||||||||||| ||||| || ||||||| | || || || || ||| Sbjct 400791 AAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAG 400732 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC-- 58158 || | || || ||||| ||| | | | |||||| | |||| ||||| | | Sbjct 400731 GGCATGCACTGCGACTTTGCTTGCTTGCTCT--TCTCAC-TCCTCAA-CAACCGCCCCAG 400676 Query 58159 --GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 |||| | || || || ||||| ||||| || | |||||| | ||||| | || Sbjct 400675 CAAGGATGCCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTAC 400616 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || || || || |||| || |||||| | | |||| |||||||||| Sbjct 400615 CGAGGCTCTTCCCTGTGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGA 400556 Query 58277 GTTTGTTGCCGACAGACT----TTTGCTCGAACTGATTGG--AGAGCGTCAT-TACAACA 58329 |||||| || ||| | || || |||| |||| | | | | |||||| Sbjct 400555 GTTTGTCGCTGACCGTCTGCTCTTGGCTC-------TTGGCAACACCAAGGTATACAACT 400503 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | | ||| || || || || ||| | |||||||| | |||||||| ||||| || | Sbjct 400502 CCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTG 400443 Query 58390 AAAA 58393 | || Sbjct 400442 AGAA 400439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764795240960