Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq20 125 1e-23 >seq20 Length=946066 Score = 125 bits (138), Expect = 1e-23 Identities = 177/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||||||||||||||||| ||| |||||| || || ||||||||||||||| Sbjct 121775 CCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTCAATG 121834 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || || || | | | | | ||||||||| || || | || || | ||| || Sbjct 121835 CTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGCG 121894 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || || |||||||||||||| || || || || | | |||||| || ||||||||| Sbjct 121895 TTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGTTTCA 121954 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 || | || |||||| ||| || ||||| || || |||||||| | ||| | || Sbjct 121955 ATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATATGTTGT 122014 Query 95032 GGGCGCTCA 95040 || |||||| Sbjct 122015 GGTCGCTCA 122023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580348435040