Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20 188 9e-43 seq27 109 7e-19 >seq20 Length=946066 Score = 188 bits (208), Expect = 9e-43 Identities = 766/1187 (65%), Gaps = 20/1187 (2%) Strand=Plus/Plus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 ||| || | ||| || || || || || || ||||||| | | | | ||| | || || Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||||||||| || ||| || ||| || || | || | || || ||||| |||| Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || |||||||| || || ||||| || ||||||||||| |||||| || | ||| || Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 63119 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 | ||||| | || |||| | | | | | || | ||||| || Sbjct 121342 ATACCAGAGCTTCT-GAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGAT 121400 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 || | ||| ||||| || || | || | | | | ||| || | || | Sbjct 121401 GGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGC 121460 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 | | ||| | ||| || |||| |||| || || ||||| || ||||| || ||||| | Sbjct 121461 AGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGA 121520 Query 63298 GAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63356 | || ||| || ||||| | | | | ||| || || || |||||| || || Sbjct 121521 GGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCA 121579 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63416 ||||| | | | ||||| |||||| || || | ||| ||||| | | || || || Sbjct 121580 AGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGC 121639 Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||| || |||||||| | || | ||| ||||| || ||||| | | ||| ||||| Sbjct 121640 TTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATG 121699 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTAC 63534 | ||||||||| ||||||| || || ||| || ||| ||||||| || | | Sbjct 121700 AGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGC 121759 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTG 63593 |||| ||||| || || || || | || ||||| | ||| || || |||| ||| Sbjct 121760 ACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACA-GGTCTTAAGTGTG 121816 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || || || || || ||||| || || |||||| || || || || ||||| || Sbjct 121817 TCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGA 121876 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 63712 | || || || || || || | || || |||||||| || || | || | || Sbjct 121877 GGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGAC 121936 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | |||| | ||| || ||||| || || || || | ||| || ||||| || || Sbjct 121937 ATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAAC 121995 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||| || || |||| ||| ||| ||| ||| || | | ||| || Sbjct 121996 ACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGGTATGA 122055 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63890 ||| | || || |||||||| | | ||| ||||| || || ||||| | ||| Sbjct 122056 ACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGACAATG 122113 Query 63891 ACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACT-TGAAATAAT 63949 | || ||||||| ||| | | | || || | | | ||| ||| || || Sbjct 122114 GCAGAGTTGAGCTCATCTGCGTGTGCCTGGACAATCT-TGTAGACTGACTCTGAGATCAT 122172 Query 63950 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 64009 || | || || || || || || || ||||| ||| | | ||| | || || || Sbjct 122173 AGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGACAGCAGA 122232 Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 || | || || || | |||||| || || || | ||| || | ||||| |||||||| Sbjct 122233 GAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCAGAATGGC 122292 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 || || ||||| |||| | || || |||||| | ||||| ||| Sbjct 122293 GTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGCCGCC 122338 >seq27 Length=812739 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || |||||||||| ||||| || | | || | ||||| || || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| ||||||||||| || |||||||| |||||||| || || || || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 |||||| || || || ||||| ||||||| ||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815332656640