Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq20 168 9e-37 seq27 105 9e-18 >seq20 Length=946066 Score = 168 bits (186), Expect = 9e-37 Identities = 764/1190 (64%), Gaps = 26/1190 (2%) Strand=Plus/Plus Query 65732 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 65791 ||| || | ||| || || || || || || ||||||| | | | | ||| | || || Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||||||||| || ||| || |||||| || | || | || || ||||| |||| Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || |||||||| || || ||||| || ||||||||||| |||||| || | ||| || Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 65912 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 65970 | ||||| | || |||| | | | | || | ||||| | Sbjct 121342 ATACCAGAGCTTCT-GAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGAT 121400 Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 || | ||| ||||| || || | || | | | ||||| || | || | Sbjct 121401 GGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGC 121460 Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 | | ||| | ||| || |||| |||| || || ||||| || ||||| || ||||| | Sbjct 121461 AGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGA 121520 Query 66091 GAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 66149 | || ||| || | ||| | || | | ||| || || || |||||| || || Sbjct 121521 GGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCA 121579 Query 66150 AGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 66209 ||||| | | | |||| |||||| || || | ||| ||||| | | || || || Sbjct 121580 AGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGC 121639 Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 ||||| || |||||||| | || | ||| ||||| || ||||| | | ||| ||||| Sbjct 121640 TTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATG 121699 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTAC 66327 | ||| || || |||||||| || || ||| || ||| | ||||| || | | Sbjct 121700 AGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGC 121759 Query 66328 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTA 66386 |||| ||||| || || || || | || ||||| | ||| || || |||| || Sbjct 121760 ACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACA-GGTCTTAAGTGTG 121816 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 || || || ||||| || || || ||| |||||| || || || || ||||| || Sbjct 121817 TCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGA 121876 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 66505 | | || || || || || | || || |||||||| || || | || | || Sbjct 121877 GGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGAC 121936 Query 66506 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 66565 | |||| | ||| || ||||| || || || || | ||| || ||||| || || Sbjct 121937 ATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAAC 121995 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 |||||| | ||| || || |||| ||| | | |||| ||| || | | ||| || Sbjct 121996 ACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGGTATGA 122055 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 66683 ||| | || || |||||||| | | ||| ||||| || || ||||| | ||| Sbjct 122056 ACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGACAATG 122113 Query 66684 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA---ATACT-TGAAAT 66739 | |||||||| | ||| | | | || ||| | ||| ||| ||| || Sbjct 122114 GCAGAGTTGAGCTCATCTGCGTGTGCCTGGAC--AATC--TTGTAGACTGACTCTGAGAT 122169 Query 66740 AATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTC 66799 || || | || || || || || || |||||||| ||| | | ||| | || || | Sbjct 122170 CATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGACAGC 122229 Query 66800 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAAT 66859 | || | || || || | ||||| || || || ||||| || | ||||| | ||| Sbjct 122230 AGAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCAGAAT 122289 Query 66860 GGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 66908 ||| || || ||||| |||| | || || |||||| | ||||| ||| Sbjct 122290 GGCGTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGCCGCC 122338 >seq27 Length=812739 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || || |||||||| | ||||| || | | || | |||||||| || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||| || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306 ||| || || || || || || ||||||| ||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170430577920