Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20 212 9e-50 seq27 123 4e-23 >seq20 Length=946066 Score = 212 bits (234), Expect = 9e-50 Identities = 1334/2107 (63%), Gaps = 65/2107 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||||||||| || || || | | ||||| ||||||||||| || || || ||| Sbjct 120260 GTGAATTGAATGGGTGCAGAAGCAGCCATAGTACGGAGATAGTACATGCCGGTCTTGAGA 120319 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || || ||||||| || ||||| || | || | || || || Sbjct 120320 CCAAGCTTCCATCCAGCAAAGTGCATGGAAGTGATCTTACCCATGGTGGGTTCCTTCATG 120379 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| |||| ||| || || || ||||| || || | ||| || ||||| | ||| Sbjct 120380 TGGATGTTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTGGATG 120439 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | || ||||| | ||| || || | || | ||||| || | | Sbjct 120440 ATAGTGCGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGTTTTTGGTCTCTTCAGGGATG 120499 Query 78958 TTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | | |||||| || || || || || || || | ||||| || | ||| | Sbjct 120500 TTGGGAATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTCTTCATGTTCTCAGAC 120559 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | || || || || || ||||| || ||||| Sbjct 120560 CAGAGACCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTTGACCACTTGGAACTCTCCG 120619 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | |||| ||| || || || ||||| || | |||| || || || Sbjct 120620 GCAAGCACACGGCGAGAGTAGATGTTCGATGTGTATGGCTCAAAGCATTCGTTGTTGCCG 120679 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||||| ||||| || || ||||| ||||| || | || || | | || Sbjct 120680 AGAATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGGGAGTTGCGGACGCC- 120738 Query 79195 TATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 ||| | | || || || || | || |||| ||||| ||||||| || ||| Sbjct 120739 -ATGCTGGGCAATCTTCTCCTTCAATGAAGCCCAGTCCCAGAGATCAGTGGGTGTGACAC 120797 Query 79253 TCCAAAGATCATATTGTAGAATACCGT----TACTAGCGTATGATCCTGTGTATGTTTCA 79308 ||| ||||| || || || || | |||| | ||| ||| |||||| || Sbjct 120798 CCCAGAGATCGTACTGGAGCTGGCCCTGAGATACTGG----TGAACCTTGGTATGTCTCG 120853 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || || || ||| | || ||| | | || ||| ||||||||| Sbjct 120854 TACGGGCCAAGCTCTTTGGCAATGTCGCAAGATGAAGTGAGAGCAGCGTGGTAAATGGTT 120913 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA--TCAAATGG-ATAATTTAAG 79425 ||||| |||| | ||||| | | ||| || |||| ||||| || | | ||| Sbjct 120914 TCGAAGATCTGAATGTTGAGCTTCTTTGCCTC--GGCTGACTCAAAGGGCAGTCTCAAAG 120971 Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 || ||| || || || | ||||| ||||||| ||| || || || || | ||| Sbjct 120972 CGAGGAAA-GCATCAGCAAGACCTTGTACACCAAGACCAATGGGCCTGTGACGGAAGTTA 121030 Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 || || || |||||| | || | || || || ||||||||||| | | Sbjct 121031 CTGCGGCGTGCCTCCTCAACAGGATAGTGGTTGACCTCAATGATCTTATTGAGATTGC-G 121089 Query 79546 ACTATTACTTTGACC-ACATCCTTTAGTTTGAGAAAATCAAA-TCGTC---CATCTATT- 79599 | | | ||| || || | ||||| | || || || ||| | | | || | Sbjct 121090 AGTGACAACCTGAGTGACTTCATGAAGTTTCTGGAAGTCGAACTCGCCACGCTTATAGTC 121149 Query 79600 -AC-AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 || ||| ||| ||| |||| ||| || || || || || || ||||||| | | | | Sbjct 121150 AACGAAAGATGG-CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAG 121208 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||| | || || ||||||||||||||| || ||||| || | || | || | Sbjct 121209 TATACTCAATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGT 121268 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | ||||| |||| || |||||||| || || ||||| || ||||||||||| |||||| Sbjct 121269 TGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAG 121328 Query 79778 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACT---TGTATCTCTTT 79833 || | ||| || | ||||| | || |||| | || || | | Sbjct 121329 CCTCGAGAATGGCATACCAGAGCTTCT-GAGC---ACGAACAGTCTCGCGGCCACGGCCC 121384 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 || | ||||| | || | ||| ||||| || || | || || | | ||| Sbjct 121385 TCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCA 121444 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 || |||| || || | ||| | ||| || || | |||| || || ||||| || Sbjct 121445 GGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAA 121504 Query 79954 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||||| || ||||| || || ||| || ||||| | || | | || || || || Sbjct 121505 AGATCTGGGATCCAGAGGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTG 121563 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 |||||| || || ||||| | | | ||||| |||||| || || | ||| ||||| Sbjct 121564 ATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGC 121623 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | ||||| || ||||| || |||||||| | || | ||| ||||| || ||||| Sbjct 121624 AAATGCACCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAAC 121683 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 | | ||| ||||| | ||| || || |||||||| || || ||| || ||| | Sbjct 121684 ACGAAGCATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGT 121743 Query 80193 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 |||||| || | | |||| ||||| || || || || | || ||||| | ||| Sbjct 121744 GGCACGGATGCGATGCACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCA 121801 Query 80251 CATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 || || |||| || || || || ||||| ||||| || || |||||| || || || Sbjct 121802 CA-GGTCTTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAA 121860 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || ||||| || | | || || || || || | || || |||||||| || Sbjct 121861 GCAAGATGACATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGT 121920 Query 80370 AAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 || | || | |||| |||| | ||| || ||||| || ||| || || | || Sbjct 121921 GAAGTACTTCTGGGACATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCAT 121979 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 | || ||||| || |||||||| | ||| || || |||| ||| | | |||| || | Sbjct 121980 GTATGCCTACGGCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGA 122039 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 80546 | | | ||| || ||| | || || |||||||| | | ||| ||||| || Sbjct 122040 TGCGGAGGAGGTATGAACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TC 122097 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATC--CTTATATTTGTTAACTACATCCATG 80604 || ||||| | ||| | |||||||| | ||| | | | || ||| | || Sbjct 122098 GCGGTCGTAGACAATGGCAGAGTTGAGCTCATCTGCGTGTGCCTG-----GACAATCTTG 122152 Query 80605 GTGA--TACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 80661 || ||| ||| || || || | || || || || || || || ||||| ||| | Sbjct 122153 TAGACTGACTCTGAGATCATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTAC 122212 Query 80662 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 80721 | ||| | || || || || | || || || | |||||| || || || ||||| Sbjct 122213 AGGTCCGCGATGACAGCAGAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCA 122272 Query 80722 ATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 80780 || | ||||| | |||||| || |||||||| |||| | || || |||||| | || Sbjct 122273 ATACGTGCGGCCAGAATGGCGTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTC 122331 Query 80781 GGCTGCC 80787 ||| ||| Sbjct 122332 GGCCGCC 122338 >seq27 Length=812739 Score = 123 bits (136), Expect = 4e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || || || |||||||||| ||||| || | | || || |||||||| || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||| || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||| || || || || || ||||||||||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266214232320