Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq20 196 6e-45 seq27 114 2e-20 >seq20 Length=946066 Score = 196 bits (216), Expect = 6e-45 Identities = 747/1155 (65%), Gaps = 22/1155 (2%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 ||| || | ||| || || || || || || ||||||| | | | | ||| | ||||| Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || ||| || |||||| || | || | || || ||||| |||| Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || |||||||| || || || || || ||||||||||| |||||| || | ||| || Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 71874 TTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTG 71932 | ||||| | || |||| | | | | | || | ||||| | Sbjct 121342 ATACCAGAGCTTCT-GAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGAT 121400 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 || | ||| ||||| || || | | | | | ||||| || || || | Sbjct 121401 GGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGC 121460 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 | | ||||| ||| || || | || | || || ||||| || ||||| || ||||| | Sbjct 121461 AGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGA 121520 Query 72053 GAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 72111 | || ||| || ||||| | || | | || || || || |||||| || || Sbjct 121521 GGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCA 121579 Query 72112 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGT 72171 ||||| | | | ||||| |||||| || || | ||| ||||| | | ||||| || Sbjct 121580 AGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGC 121639 Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 ||||| || |||||||| | || | ||| ||||| || ||||| | | ||| ||||| Sbjct 121640 TTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATG 121699 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 | ||| || || | |||||| || || ||| || ||| ||||||| || ||| Sbjct 121700 AGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGC 121759 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTA 72348 |||| ||||| || || || || | || ||||| | ||| || || |||| || Sbjct 121760 ACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACA-GGTCTTAAGTGTG 121816 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 || || || ||||| || || || ||| |||||| || || || || ||||| || Sbjct 121817 TCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGA 121876 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | | || || || || || | || || |||||||| || || | || | ||| Sbjct 121877 GGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGAC 121936 Query 72469 A-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGAC 72527 | |||| | ||| || ||||| || ||| || || | |||||| ||||| || || Sbjct 121937 ATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAAC 121995 Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGA 72587 |||||| | |||||| || |||| ||| | | |||| || || | | ||| || Sbjct 121996 ACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGGTATGA 122055 Query 72588 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 72645 ||| | || || |||||||| | | ||| ||||| || || ||||| | ||| Sbjct 122056 ACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGACAATG 122113 Query 72646 ACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA--TACT-TGAAATA 72702 | || ||||| | ||| | | | || || | || || ||| ||| || Sbjct 122114 GCAGAGTTGAGCTCATCTGCGTGTGCCTGGACAAT---CTTGTAGACTGACTCTGAGATC 122170 Query 72703 ATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCA 72762 || || | || || || || || || || ||||| ||| | | ||| | || || || Sbjct 122171 ATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGACAGCA 122230 Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 || | || || || | |||||| || || || ||||| || | ||||| |||||| Sbjct 122231 GAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCAGAATG 122290 Query 72823 GCATAATCTGGATGT 72837 || || ||||||||| Sbjct 122291 GCGTAGTCTGGATGT 122305 >seq27 Length=812739 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || || || |||||||||| |||||||| | | || | |||||||| || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || |||||||| ||||||||||| || |||||||| || || ||||| || ||| || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 |||||| || || || || || ||||||| ||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136783898880