Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27 170 3e-37 seq20 102 1e-16 >seq27 Length=812739 Score = 170 bits (188), Expect = 3e-37 Identities = 572/889 (64%), Gaps = 70/889 (8%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| || | ||||| ||||| | || ||||| ||||| | |||||| | ||||| ||| Sbjct 401311 TGGCAATTCTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCC 401252 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || |||| ||| | | || ||| ||| ||||| || || || ||| Sbjct 401251 AAGGATCTTCACGACTGGAACAAGCGCCTGAATGATGACGAGCGCTTCTTCATCTCCCAC 401192 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | || ||||| || | ||||||||| || |||||||| || || || || ||||| Sbjct 401191 GTCCTCGCTTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAG-CGATT 401133 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| ||| | || || || | ||||| ||||| ||||| |||||||| || Sbjct 401132 CTCCAGCGAGGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGA 401073 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||| | |||||||||| |||||| || || |||| || || |||| || ||| Sbjct 401072 GAACATCCACTCGGAAACCTACTCTCTCCTCATCGACACCTATATCAGCGAGCCTAAGCA 401013 Query 125318 ACGTAAACACATGCTCTTT---------------------------AACGCAATCGA--- 125347 ||| || || || || | || |||| || Sbjct 401012 ACGCAACTACTTGTTCAATGCCATTGACAACAGTAAGTCCAACCAAAATGCAAATGAAAA 400953 Query 125348 -----------CACG-----GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGT 125391 |||| || || | || || || ||||| | |||| | || | Sbjct 400952 GACGCGTCTAACACGTAACAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGAT 400893 Query 125392 GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 ||||| ||| | || || | | ||| | | || || || ||||| || || |||| Sbjct 400892 GGATCACAGACAAGAACTCGACTTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGG 400833 Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511 | |||||||| || ||||| |||||||||||||||||||||| || || |||| Sbjct 400832 GTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGATGC 400773 Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 |||| ||||| | |||||| | || ||||| || |||||| | ||||| ||||||| Sbjct 400772 CCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTG 400713 Query 125572 CCATTCTACTGTTTCGCAACTATCTGCGTCC-CGAGTGCAGATCCAGCGATGAAAAGGTC 125630 | || || || || ||| ||| | | | | ||||| | || ||| Sbjct 400712 C-------TTGCTT-GC-TCT-TCTCACTCCTCAACAACCGCCCCAGCAAGGATGCCGTC 400663 Query 125631 ATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG 125690 | || | || || || ||| ||| || || ||||| || ||||| | || || Sbjct 400662 AAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCC- 400604 Query 125691 GTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 | || || | ||||||||| ||| || |||||| ||||||| |||||||| || || Sbjct 400603 CTGTGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGA 400544 Query 125750 TCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 ||||| || | | |||| | |||| | |||||| ||| || ||||| || Sbjct 400543 CCGTCTGCT---CTTGGCTCTTGGCAACACCAAGGTATACAACTCCACAAACCCCTTCGA 400487 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||||| | ||| || || | || ||||||||||| || |||||| Sbjct 400486 CTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAG 400438 >seq20 Length=946066 Score = 102 bits (112), Expect = 1e-16 Identities = 305/464 (66%), Gaps = 10/464 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || ||||| || || Sbjct 121653 CAGGGTGGCAACAAGCGCCCGGGTGCATTTGCCATCTACCTCGAGCCATGGCATGCTGAT 121594 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| || | || ||||||| || ||| ||||| | || ||| | || Sbjct 121593 GTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGTGCCCGCGAT 121534 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG---ACGGTGGC 97052 | || ||||| |||||| | |||||| | ||||||||||| ||| | | |||||| Sbjct 121533 CTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAGAACGGTG-- 121476 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| | | |||||| || | | || || || | || || ||||| ||| Sbjct 121475 -AATGGACATTGTTCTGCCCCAACGAGGCCCCTGGCCTTGCTGACGTCTATGGCGATGAG 121417 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 ||||| | ||| ||||||| |||||||| || ||||| ||| ||| Sbjct 121416 TTTGAAGAGCTCTACCATCGTTACGAGCGCGAGGGCCGTGGCCGCGAGACTGTTCG-TGC 121358 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||||| | ||||||| || ||||| | || | ||| | Sbjct 121357 TC-AGAAGCTCTGGTATGCCATTCTCGAGGCTCAGACTGAAACTGGTAACCCCTTCATGC 121299 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | ||||||||| || || | || |||||||| || | || |||||| | | Sbjct 121298 TATACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGTT 121239 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || || ||||| || ||| | ||||| | |||| || ||| Sbjct 121238 CTAACCTCTGCACTGAGATTATTGAGTATACTGCTCCCGATGAG 121195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056532186880