Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq82 107 1e-18 >seq82 Length=92890 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || ||||| || |||||||| ||| ||| | | | ||||| Sbjct 12968 ACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 13027 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | ||| |||||||| ||||| ||||| ||||| | Sbjct 13028 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 13087 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || || || || | || ||| || || | |||||| || || Sbjct 13088 ATCTTGGACTTGACGTTGTCGATTGTGTC-CGATGATTCCACCTCCAGGGTAATTGTCTT 13146 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || |||||||||||| Sbjct 13147 GCCAGTCAGAGTCTTGACGAAAATTTGCATA 13177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177928751008