Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq82 136 9e-27 seq52 84.2 5e-11 >seq82 Length=92890 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || ||||||||||| || ||||| || || |||| ||||| || | || Sbjct 12746 TGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCCAACTGC 12805 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| || |||||||| || || || |||||||| ||||| Sbjct 12806 TTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTG 12865 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | |||||||| || | || ||||| | || || || | ||| || ||||| ||||| Sbjct 12866 GACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTTCCAGTC 12925 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || |||||||| Sbjct 12926 AGTGTCTTGACGAAGATCTGCAT 12948 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | || ||||||||||| || || ||||| || ||||| | || ||| Sbjct 12965 AGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 13024 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | |||||| || ||||| || ||||| || || Sbjct 13025 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 13084 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | || || | ||| ||||| || ||||| ||| Sbjct 13085 TGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTC 13144 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || ||||| Sbjct 13145 TTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 >seq52 Length=336907 Score = 84.2 bits (92), Expect = 5e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | || || || || || || ||| Sbjct 188391 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 188450 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || || | ||||||||| || || || || || || ||||||||| ||||| || Sbjct 188451 GCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATC-TTGCTCTT 188509 Query 104482 TACATTTTCT 104491 ||||| ||| Sbjct 188510 CACATTGTCT 188519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394151339904