Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq49 118 2e-22 seq19 114 2e-21 >seq49 Length=370555 Score = 118 bits (130), Expect = 2e-22 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 367403 GCCAAGCGCCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 367461 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| |||||||||||||| ||||||||| |||| Sbjct 367462 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 367500 Score = 96.9 bits (106), Expect = 5e-16 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| |||| | |||| ||||||| || || |||| ||| | Sbjct 367561 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 367620 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || ||||||||||| || | ||| | ||||| | Sbjct 367621 CAGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTCGATGTTGTCTACG 367680 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | |||| || |||||||| | | || ||||| || |||| Sbjct 367681 CCCTGAAGCGACAAGGCCGCACCCTGTACGGTTTCGGTGGTTA 367723 >seq19 Length=973684 Score = 114 bits (126), Expect = 2e-21 Identities = 87/100 (87%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 965580 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 965522 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | || ||||| |||||||||||||| ||||||||| |||| Sbjct 965521 TTCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 965482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074936679584