Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20 205 1e-47 seq27 123 3e-23 >seq20 Length=946066 Score = 205 bits (226), Expect = 1e-47 Identities = 771/1189 (65%), Gaps = 24/1189 (2%) Strand=Plus/Plus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 ||| || | ||| || || || || || || ||||||| | | | | ||| | || || Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||| || ||| || ||| || || | || | || || ||||| |||| Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || |||||||| || || ||||| || ||||||||||| |||||| || | ||| || Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 63068 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTG 63126 | ||||| | || |||| | | | | | || | ||||| | Sbjct 121342 ATACCAGAGCTTCT-GAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGAT 121400 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 || | ||| ||||| || || | || | | | ||||| || | || | Sbjct 121401 GGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGC 121460 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 | | ||| | ||| || |||| |||| || || ||||| || ||||| || ||||| | Sbjct 121461 AGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGA 121520 Query 63247 GAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63305 | || ||| || ||||| | || | | ||| || || || |||||| || || Sbjct 121521 GGGC-ATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCA 121579 Query 63306 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63365 ||||| | | | ||||| |||||| || || | ||| ||||| | | || || || Sbjct 121580 AGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGC 121639 Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||| || |||||||| | || | ||| ||||| || ||||| | | ||| ||||| Sbjct 121640 TTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATG 121699 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63483 | ||||||||| ||||||| || || ||| || ||| ||||||| || | | Sbjct 121700 AGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGC 121759 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTG 63542 |||| ||||| || || || || | || ||||| | ||| || || |||| ||| Sbjct 121760 ACATTG--AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACA-GGTCTTAAGTGTG 121816 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602 || || |||||||| ||||| || || |||||| || || || || ||||| || Sbjct 121817 TCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGA 121876 Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 63661 | | || || || || || | || || |||||||| || || | || | || Sbjct 121877 GGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGAC 121936 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63721 | |||| | ||| || ||||| || || || || | ||| || ||||| || || Sbjct 121937 ATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAAC 121995 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63781 |||||| | ||| || || |||| ||| | | |||| ||| || | | ||| || Sbjct 121996 ACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGGTATGA 122055 Query 63782 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63839 ||| | || || |||||||| | | ||| ||||| || || ||||| | ||| Sbjct 122056 ACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGACAATG 122113 Query 63840 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA--TACT-TGAAATA 63896 | |||||||| | ||| | | | || || | || || ||| ||| || Sbjct 122114 GCAGAGTTGAGCTCATCTGCGTGTGCCTGGACAAT---CTTGTAGACTGACTCTGAGATC 122170 Query 63897 ATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCA 63956 || || | || || || || || || || ||||| ||| | | ||| | || || || Sbjct 122171 ATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGACAGCA 122230 Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || | || || || | |||||| || || || ||||| || | ||||| |||||| Sbjct 122231 GAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCAGAATG 122290 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 || || || ||||| |||| | || || |||||| | ||||| ||| Sbjct 122291 GCGTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGCCGCC 122338 >seq27 Length=812739 Score = 123 bits (136), Expect = 3e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || || || |||||||||| ||||| || | | || || |||||||| || || Sbjct 400705 CAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGT 400764 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || |||||||| ||||||||||| || |||||||| |||||||| || || ||| || Sbjct 400765 CAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAA 400824 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 |||||| || || || ||||| ||||||| ||| Sbjct 400825 GAAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944957390080