Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq20 360 5e-94 >seq20 Length=946066 Score = 360 bits (398), Expect = 5e-94 Identities = 1156/1761 (66%), Gaps = 56/1761 (3%) Strand=Plus/Minus Query 363427 CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGT 363486 || ||||| || | ||| ||| || || || |||||| | ||||||||||| | || Sbjct 122043 CGCATCAACGGCAAGGTTGCTGAGCGACCACAACATATGCTGATGCGTGTTGCCGTAGGC 121984 Query 363487 ATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GT 363545 || ||| | || |||| |||||||||||||| | || | | || | | || Sbjct 121983 ATACATGGAGAAGACATTGAAAAGGCGATTGAAACATACGA-CTAC-ATGTCCCAGAAGT 121926 Query 363546 A-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTT 363604 | ||||| ||||| | || ||| | | ||| || || || | | || |||||||| | Sbjct 121925 ACTTCACACACGCTTCCCCCACACTCTTCAACGCAGGCACACCTTCGCCTCAGATGTCAT 121866 Query 363605 CTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 ||||||| ||| | | |||||||| || ||| |||||||| | ||||||||||||| Sbjct 121865 CTTGCTTCCTTATTGACATGAAGGAAGACAGCATTGAGGGTATTTACGACACACTTAAGA 121806 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCG 363722 ||||| || || ||||||| ||| ||||| |||| || || || || | | || Sbjct 121805 CCTGTGCACTCATCTCCAAGACTGCTGGCGGTATTG--GTCTCAATGTGCATCGCATCCG 121748 Query 363723 TG-CACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATG 363780 || ||| | | ||||| | ||||| || ||| || || || || |||| ||| Sbjct 121747 TGCCACTG-GCTCATACATCGGAGGCACTAATGG-TACTTCAAACGGTCTCATTCCTATG 121690 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||||||| | |||| ||||| | || ||||| |||||||| |||||| || Sbjct 121689 CTTCGTGTTTACAACAACACTGCTCGTTATGTCGATCAGGGTGGCAACAAGCGCCCGGGT 121630 Query 363841 GCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGG 363900 || ||||| || || |||||||| ||||| ||| | |||| || ||||| || || Sbjct 121629 GCATTTGCCATCTACCTCGAGCCATGGCATGCTGATGTCTTTGGTTTCCTTGACCTGCGC 121570 Query 363901 AA-AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || || ||| || || || ||| | ||||| || ||||| |||||||| || ||| | | Sbjct 121569 AAGAATCAC-GGCAAGGAAGAAGTTCGTGCCCGCGATCTCTTCTATGCCCTCTGGATCCC 121511 Query 363960 TGACCATTTTATGAAGCGCGT---GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 || | ||| |||||||| || |||| ||| ||| ||| || | || ||||| | Sbjct 121510 AGATCTTTTCATGAAGCGTGTCCAGGAGAACGGT--GAA-TGGACATTGTTCTGCCCCAA 121454 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||| || || ||| | || || | || || || | || | || ||| | || Sbjct 121453 CGAGGCCCCTGGCCTTGCTGACGTCTATGGCGATGAGTTTGAAGAGCTCTACCATCGTTA 121394 Query 364077 TGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || ||||| | || |||| ||| || |||||||| |||| |||||| | Sbjct 121393 CGAGCGCGAGGGCCGTGGCCGCGAGACTGTTCGTGCTCAGAAGCTCTGGTATGCCATTCT 121334 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || | |||| ||| || || | |||| ||| | ||||| ||| | |||||| | || Sbjct 121333 CGAGGCTCAGACTGAAACTGGTAACCCCTTCATGCTATACAAGGATGCCTGCAACAGGAA 121274 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTG 364255 | ||||||| || |||| ||||| | || |||| | ||||| || || |||||||||| Sbjct 121273 GAGCAACCAGAAGAACCTCGGTACCA-TCCGCAGTTCTAACCTCTGCACTGAGATTATTG 121215 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 | || || |||||||| ||| ||| || || |||||||| || |||| | || | | Sbjct 121214 AGTATACTGCTCCCGATGAGGTTGCTGTCTGCAACCTTGCCTCTCTCGCTTTGCCATCTT 121155 Query 364316 TTG-----TAAAAG-ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369 | | || ||| ||| || ||| |||| | ||| |||| || || | || Sbjct 121154 TCGTTGACTATAAGCGTGGCGAGTTCGACTTCCAGAAACTTCATGAAGTCACTCAGGTTG 121095 Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429 ||| |||||||| | ||| | || || || | ||||| || || || | Sbjct 121094 TCACTCGCAATCTCAATAAGATCATTGAGGTCAACCACTATCCTGTTGAGGAGGCACGCC 121035 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 | ||| | ||||| | || ||||||||||||||||| || || ||||| | ||| Sbjct 121034 GCAGTAACTTCCGTCACAGGCCCATTGGTCTTGGTGTACAAGGTCTTGCTGATGCTTTCC 120975 Query 364490 T-GATGCTCAAGA-TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | | | | ||| || | ||||| || | || || || || | ||||||| Sbjct 120974 TCGCT--TTGAGACTGCCCTTTGAGTCAGCCGAGGCAAAGAAGCTCAACATTCAGATCTT 120917 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGA-TTTGGCAAAAACCAAGGGAA 364606 ||||| || || || || | ||| | || || || ||| |||| | | || Sbjct 120916 CGAAACCATTTACCACGCTGCTCTCACTTCATCTTGCGACATTGCCAAAGAGC-TTGGCC 120858 Query 364607 AGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 |||| || || | || || || | || ||||| | |||||| ||||| ||| Sbjct 120857 CGTACGAGACATACCAAGGTTCACCAGTATCTCAGGGCCAGCTCCAGTACGATCTCTGGG 120798 Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGA------ 364720 |||||| || ||| | ||| ||||| ||| | || || | |||| Sbjct 120797 GTGTCACACCCACTGATCTCTGGGACTGG-----GCTTCATT-GAAGGAGAAGATTGCCC 120744 Query 364721 AGCATGGTACTCGCAACTCC---CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCAC 364777 ||||||| ||||||||| |||||| || |||||||| || || || || | | Sbjct 120743 AGCATGGCGTCCGCAACTCCCTACTCGTT---GCACCCATGCCTACTGCCTCAACATCTC 120687 Query 364778 AGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGG 364837 | || ||||| |||||||| ||||| || || | ||| || | || || ||||| | Sbjct 120686 AAATTCTCGGCAACAACGAATGCTTTGAGCCATACACATCGAACATCTACTCTCGCCGTG 120627 Query 364838 TTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCG 364897 | ||| ||||||| || | || || || | || ||||||| || |||| | Sbjct 120626 TGCTTGCCGGAGAGTTCCAAGTGGTCAACCCATGGCTGCTCAAGGACCTCGTCGACATGG 120567 Query 364898 GGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACA 364957 | || ||| ||| | |||||||||| ||||| || | || || | ||| | Sbjct 120566 GTCTCTGGTCTGAGAACATGAAGAACCGCATCATTGCTGAGGGCGGCTCGATTCAGCGAA 120507 Query 364958 TTCCAGGATTTCCAGA--AGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCAT 365015 |||| | || || ||| | || || | ||||| || || ||||| || || Sbjct 120506 TTCCCAACATCCCTGAAGAGACCAAAAACC--TCTACAAGACTGTCTGGGAGATCTCTCA 120449 Query 365016 GCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTT 365075 ||| ||| |||| | ||||| || || || |||||||| || ||| |||||| || Sbjct 120448 GCGCACTATCATCCAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCCCAGTCTTT 120389 Query 365076 TAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTG 365135 ||| | ||||| | || ||| | ||| | || |||||||| || || || Sbjct 120388 GAACATCCACATGAAGGAACCCACCATGGGTAAGATCACTTCCATGCACTTTGCTGGATG 120329 Query 365136 GAAATCCGGTCTTAAGACAGG 365156 ||| ||||| ||||| || Sbjct 120328 GAAGCTTGGTCTCAAGACCGG 120308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348790625216