Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq27 141 9e-29 seq82 109 5e-19 >seq27 Length=812739 Score = 141 bits (156), Expect = 9e-29 Identities = 346/518 (67%), Gaps = 21/518 (4%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAG-CAGCACCGCGAC 46145 || ||| | |||||||| |||||||||| || ||||||| ||| || | | |||| Sbjct 400929 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATCA-CAGACAAGAACTCGAC 400871 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 ||| ||| || | || ||||| || ||| ||||| |||| || |||| || Sbjct 400870 TTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTT 400811 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 ||| ||||||||| |||| | ||| | |||||||| ||||| || |||||| Sbjct 400810 TGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGA 400751 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGT---CTCTACTATAACAC 46322 ||| || || || || |||||| |||| |||||||| || |||| || ||| Sbjct 400750 GCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTGCTTGCTTGCTCTTCT----CAC 400695 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA----GC-ATGTTCAAGGAGGCG 46377 || | | |||| | || || | | ||| | || || ||| ||||| Sbjct 400694 TC-----CTCAACAACC--GCCCCAGCAAGGATGCCGTCAAGGCTATCATCACTGAGGCT 400642 Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437 |||| || ||| ||||||| |||| | || || ||| ||| ||||||||||||||| Sbjct 400641 GTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCCTGTGCTCTGCTGGGCATGAAC 400582 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 || | |||||| | ||||| |||||||| || ||||| |||||| || ||| | Sbjct 400581 GCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGTCTGCTCTTGGCTCTTGGC 400522 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | | ||| | || | || || || || || ||| | |||||||| || | Sbjct 400521 AACACCAAGGTATACAACTCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCT 400462 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || || || ||||| ||||| || || Sbjct 400461 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 400424 >seq82 Length=92890 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | || | || || |||||||| |||||||| ||| | Sbjct 13468 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 13527 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| || ||||||||||| |||||| Sbjct 13528 AAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGG 13587 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | ||||| | ||||| | Sbjct 13588 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACC 13647 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 13648 TCGAGGGTGATGGTCTTGCCGGT 13670 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || ||||| | |||||| || || || |||||||| ||| Sbjct 12950 CCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 13009 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| ||| |||| | |||||| ||||| ||||| Sbjct 13010 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGA 13069 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | || || | Sbjct 13070 ATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACC 13129 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || ||||| || |||||||| ||||| Sbjct 13130 TCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || ||||| || ||||||||||| ||| Sbjct 12722 CCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAA 12781 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | |||||| || ||| |||| | ||||||||||| |||||| Sbjct 12782 AGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGG 12841 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | || | || ||| | ||||| | Sbjct 12842 ATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACT 12901 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 12902 TCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011100753920