Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq179 140 2e-28 seq13 91.5 1e-13 >seq179 Length=3473 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2098 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2039 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2038 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2004 >seq13 Length=1064643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 218/330 (66%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| |||| ||| | ||| | ||| |||| | ||| | |||||||||||||| || Sbjct 292789 CACCATGGCCACCATTAACATTCGTCGCGATGTCACCGACCCCTTCTACCGCTACAAGAT 292848 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 | ||| || |||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 292849 GGAGCGTCTCCAGTCCAAAATTGAAGGAAAGGGTAACGGCATCAAGACTGTCATCGTCAA 292908 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 | || || ||| | | || | ||||| || | || | ||||| || || Sbjct 292909 CCTGAGCAGCGTTGCTCACTCCCTGGCCCGCCCACCCGCTCACGTCATCAAATACTTTGG 292968 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397 | ||||||||| |||||||| | | | ||| | || || | || || ||||| Sbjct 292969 CTTCGAACTTGGAGCTCAGACAAATACCAACCCCAATGATGACCGATGGATTGTCAACGG 293028 Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457 | ||| || | ||| || ||||||| || || ||||| || ||||||||| || Sbjct 293029 CGCCCATGACGCCAGCAAACTCCAGGACTACCTCGATGGCTTCATCTCCAAGTTTGTTCT 293088 Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || | | ||| | ||||| |||||||| Sbjct 293089 CTGCAAGAAGTGCAAGAACCCCGAGACCGA 293118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946024335328