Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq27 84.2 2e-11 >seq27 Length=812739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| ||||||||| || | || || || || || || | ||| ||| ||| || Sbjct 400706 AAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 400765 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | ||| || || |||||||||||||| || |||||||| ||| || Sbjct 400766 AGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAG 400825 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT-ACT 93267 || ||||| || || || || || || |||| || ||||||| | | | || || Sbjct 400826 AAGATACCCTCGACAGCAGCGAAGGCAACAAGGCGGGTGGCAAAAGTCGAGTTCTTGTCT 400885 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 | |||||||| | |||||| ||||| || || Sbjct 400886 G-TGATCCATCGCAGAGCCCAGTCGGCCTTCTT 400917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858795301120