Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq82 136 3e-27 seq52 96.9 3e-15 seq59 95.1 1e-14 >seq82 Length=92890 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || | || || || |||||| | | Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || |||||||||||||| |||||||| || || ||| Sbjct 13116 GACACAATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 13057 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | || ||| |||||| ||||||| |||||| Sbjct 13056 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 12997 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| ||| | ||||| || | || |||| || ||| Sbjct 12996 ATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGGT 12949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | ||||| || | | | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || || ||||||||||| || || || || Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||||| ||||| ||| || | ||||| |||||| Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| ||||| Sbjct 12768 ATTCAGAAAGAGTCCAC 12752 >seq52 Length=336907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || |||||||| || || || ||||| ||||| Sbjct 188503 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTTGCTGGCAAG 188444 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| | ||||| |||||||| || || || || || Sbjct 188443 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGAC 188391 >seq59 Length=254989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || ||||| || || || || |||||||| ||||| || Sbjct 239742 AGACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGA 239683 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||| || | || ||||||||||| || || || |||||| | || || || Sbjct 239682 GGATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGT 239626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726526754720