Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq27 132 1e-25 >seq27 Length=812739 Score = 132 bits (146), Expect = 1e-25 Identities = 287/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | || ||||| ||||||||||||||||||||||||| Sbjct 400442 TCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 400501 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||| || | || | ||||| || |||||||| | Sbjct 400502 GAGTTGTATACCTTGGTGTTGCCAAGAGCCAAGAGCAGACGGTCAGCGACAAACTCAATG 400561 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | ||||||||| | || | ||| |||| ||||| | | Sbjct 400562 TACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGAGCACAGGGAAGAGCCTCGGTAAGG 400621 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTT-----CACCTGTGCCAGAG 251797 || |||| ||| | | || ||||| | || ||||| || | ||| | | Sbjct 400622 AACTCCTGCTCGATCTCCACAGCCTCAGTGATGATAGCCTTGACGGCATCCTTGCTGGGG 400681 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAG-GAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 | ||||| || |||| | || ||| | |||| | ||||| ||||| Sbjct 400682 --CGGTTGTT---GAGGAGTGAGAAGAGCAAGCAAG-CAAAGTCGCAGTGCATGCCCTCA 400735 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| ||||| ||||||||| | ||| || ||||||| ||||| ||| ||||| Sbjct 400736 TCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTCTTGAGC 400795 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 || ||||| | |||||| ||| ||| | | |||||||||| | | |||||| Sbjct 400796 CAAAAGATGGAAGCAAAGGAGCCACTGAAGAAGATACCCTCGACAGCAGCGAAGGCAACA 400855 Query 251977 AGGCG 251981 ||||| Sbjct 400856 AGGCG 400860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833007282208